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3 protocols using cyclotraxin b

1

Nitrous Oxide and Neuroprotective Agents

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Cyclotraxin B and 6,7-dinitroquinoxaline-2,3-dione (DNQX) were purchased from Tocris (Minneapolis MN). Rapamycin was from Cayman Chemical (Ann Arbor MI). Ketamine, CNQX other agents were obtained from Millipore Sigma (St. Louis MO). N2O with 5.04% carbon dioxide was purchased from Puritan Medical Products (Overland KS) and was bubbled into a reservoir containing ACSF at the time of experiments (25 (link)). We measured N2O in ACSF as a way to monitor our solutions (Supplemental Methods and Results). In some experiments, we administered 30% N2O in vivo prior to slice preparation. Because of use of different gas conditions and recording paradigms, experimenters were not blind to recording conditions. Experiments were done with 30% nitrous oxide, a maximal concentration for use in ex vivo slices (25 (link)).
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2

Dental Pulp Stem Cell Characterization

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Human dental pulp stem cells (DPSCs) were purchased from Lonza, Pharma, and Biotech (Cat. # PT-5025). The TrkB agonist (LM22A-4) was purchased from R&D System, the TrkB antagonist (Cyclotraxin-B, CTX-B) was purchased from Tocris Bioscience, and the recombinant human BDNF protein was purchased from Invitrogen. The MEMα, PBS, FBS, L-glutamine, and antibiotic–antimycotic were procured from Gibco™ Fisher Scientific (Waltham, MA, USA). Round, Poly-D-Lysine-coated (BioCoat™, 12 mm) German glass coverslips were purchased from Corning™ Fisher Scientific (Waltham, MA, USA). Various antibodies were procured: rabbit anti-BDNF (Santa Cruz, Dallas, TX, USA), rabbit anti-TrkB receptor (Proteintech, St. Louis, MO, USA), mouse anti-DMP-1 (R&D System/Sigma, St. Louis, MO, USA), and rabbit anti-DSPP (Santa Cruz, Dallas, TX, USA). Fluorescent secondary antibodies were obtained from Life Technologies (Grand Island, NY, USA). Lipoteichoic acid (LTA) from Staphylococcus aureus (Cat. # L2515) was purchased from Sigma-Aldrich (St. Louis, MO, USA).
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3

Pharmacological Modulation of SCs

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The desired concentration of each substance was achieved by the dilution of stock into the culture medium. Substances used were dicyclopropyl-linoleic acid (DCP-LA; Merck Life Science) 500 nM, selective PKCε activator; cyclotraxin B 10 nM (Tocris, Bio-Techne, Milan, Italy); and human recombinant BDNF 1 nM (Merk Life Since). Drug concentration was set in previous experiments (Kawano et al., 1997 (link); Bonalume et al., 2020 (link)), without toxic effects. Control cultures were treated with vehicle (DMSO). Differentiated SCs primary cultures were treated for the indicated times after overnight serum-free medium exposure. Medium changes and pharmacological treatments were done every other day.
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