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Xf 96 well plate

Manufactured by Agilent Technologies

The XF 96-well plates are a key component of the Seahorse XF Analyzer system. These plates are designed to hold and analyze cell samples during metabolic and respiratory measurements.

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18 protocols using xf 96 well plate

1

Oxygen Consumption Rate Measurement

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The measurement of oxygen consumption rate was carried out using Seahorse Bioscience XF-96 extracellular flux analyzer (Seahorse Bioscience). NB cells were seeded in XF 96-well plate (Seahorse Bioscience) with Seahorse XF medium supplemented with 10 mM glucose, 1 mM sodium pyruvate and 2 mM glutamine. The plate was pretreated in non-CO2 condition for 1 h and sequentially injected oligomycin (inhibition of ATP synthase), FCCP (uncoupling agent of oxygen consumption from ATP production), and rotenone and antimycin A (inhibitor of complex I and III in electron transport chain of mitochondria) into each well, and then proceed in XF analyzer for OCR measurement and analysis.
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2

Neutrophil Glycolytic Capacity Measurement

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The neutrophil extracellular acidification rate (ECAR, mpH/min) was analyzed using an XFe96 extracellular flux analyzer Glycolysis Stress Test Kit (Seahorse Bioscience, 102194-100, North Billerica, MA, USA), according to the manufacturer’s instructions. All media and injected reagents were adjusted to pH 7.4. Neutrophils were harvested, sorted and resuspended in ECAR medium (DMEM base (no bicarbonate) with 2 mM L-glutamine, 143 mM NaCl, and 0.5% phenol red (pH 7.35)) and seeded in the Seahorse XF-96-well plate coated with poly-l-lysine at a density of 0.3 × 106 cells per well. Cells were starved and incubated at 37 °C in a non-CO2 incubator for 1 h prior to the start of the assay. Three baseline ECAR measurements were made before sequential injection of glycolysis drugs. The assay consisted of four stages: (1) basal (no drugs), (2) induction of glycolysis (10 mM glucose), (3) induction of maximal glycolysis (5 µM oligomycin), and (4) inhibition of glycolysis (100 mM 2DG). Glycolytic capacity was calculated by subtracting the “mean basal ECAR values” from the “mean highest ECAR values induced by oligomycin”. At least three replicates were performed for each group.
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3

Mitochondrial and Glycolytic Profiling

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Cells were seeded at 1.5 × 104 cells/well in a Seahorse XF 96-well plate. Mito-stress test and glycolysis test were performed according to Agilent Technologies recommendations. Oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) was used as an indicator of mitochondrial function and glycolytic activity, respectively. Analyses were performed using the Desktop Wave Software (Agilent Technologies).
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4

Mitochondrial Function Assay in U118MG Cells

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Mitochondria were isolated from 2OHOA treated and control U118MG cells by ultracentrifugation as described [22 (link)]. Isolated mitochondria were then seeded at 2 μg/well in a Seahorse XF96 well plate. Mitochondrial coupling was assayed by the sequential addition of ADP (4 mM final), oligomycin (2.5 μg/mL final), FCCP (4 μM final), and Antimycin A (4 μM final) to state 2 respiring mitochondria supplied with rotenone and succinate as a respiratory substrate. Mitochondrial electron flow was assayed by the sequential addition of rotenone, succinate, Antimycin A and the complex IV substrate Ascorbate/N,N,N′,N′-Tetramethyl-p-phenylenediamine dihydrochloride (TMPD) to slightly depolarized (4 μM FCCP) mitochondria provided with pyruvate and malate as substrates. Assays were performed as detailed in Agilent’s Seahorse application note (https://www.agilent.com/cs/library/applications/5991-7145EN.pdf, accessed on 4 February 2022). Glycolytic and mitochondrial ATP production was determined by Agilent’s Seahorse machine and the real-time ATP rate assay kit following the manufacturer’s instructions. Glycolysis was estimated by Agilent’s Seahorse machine using the Glyco Stress kit following the manufacturer’s instructions.
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5

Mitochondrial Function Evaluation in Adipocytes

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T37i/iBPA_m mature adipocytes were seeded at 1.5 ×104 cells/well in a Seahorse XF 96-well plate. Mito-stress test was performed according to Agilent Technologies recommendations with minor adaptations for adipocyte cell types (Reggio et al., 2020a (link), 2020b (link)). In particular, 1 μM oligomycin A, 1.5 μM FCCP and 1 μM /1 μM rotenone/antimycin were used to perturbe mitochondria respiration. Basal oxygen consumption rate and proton leak were calculated using the Desktop Wave Software (proprietary of Agilent Technolgies). Cells were treated for 16 h with EVs prior to Seahorse analysis.
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6

Mitochondrial Function Assay in Macrophages

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Cells were plated in 6-well tissue culture plate at a final density of 106 cells/well and after 24 h they were transfected with 100 nM Arg2 TSB or NC TSB in DMEM serum-free medium and lipofectamine 3000 transfection reagent (ThermoFisher Scientific). At 6 (BMDMs)-24 (RAW 264.7) hours after transfection, cells were gently scraped, counted, and re-seeded on an XF 96-well plate (Agilent) in complete DMEM (+10% L929 supernatant in media for BMDM) at a final density of 5 × 104 cells/well. Cells were then stimulated with 10 ng/mL LPS for further 24 h followed by MitoStress test as described in.7 (link) Five independent experiments (with multiple wells/treatment) were performed for this assay in BMDM, while preliminary data for one experiments was obtained for RAW 264.7 cells.
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7

Measuring Fly Mitochondrial Respiration

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Isolated mitochondria were extracted from 16 heads of one week or four week old male flies according to the manufacturer’s protocol (Seahorse/Agilent)32 (link) and their oxygen consumption rate measured by the XF-96 well plate (Seahorse Agilent). Activation of the respiratory chain was initiated by ADP addition to the medium.
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8

Cellular Bioenergetics Analysis using Seahorse XF

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Analyses of cellular bioenergetics were performed using the Seahorse XFe96 Extracellular Flux Analyzer (Agilent, Santa Clara, CA). Twenty-five thousands cells/well were plated in XF 96-well plates (Agilent) and allowed to adhere at 37 °C, 5% CO2, for 7 h before treatment with OT-82 or DMSO for 16 h. Measurements were performed according to manufacturer’s instructions, as previously described44 (link),70 (link),71 (link). Each experiment was performed at least three times with three technical replicates.
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9

Assessing Cellular Bioenergetics with Seahorse XFe96

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The Seahorse XFe96 Extracellular Flux Analyzer (Agilent, Santa Clara, CA) was used to analyze cellular bioenergetics. Cells were plated in XF 96-well plates (Agilent) at a density of 25,000 cells/well and adhered to the plate at 37 °C, 5% CO2, for 4-8 hours before treatment with OT-82 or DMSO for 20 hours. The Glycolytic Rate Assay was performed according to manufacturer's instructions and the Mito Stress Test was performed as previously described. (14, (link)43) (link) Each assay was performed at least three times with at least three biological replicates.
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10

Cellular Bioenergetics Analysis with Seahorse XFe96

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The Seahorse XFe96 Extracellular Flux Analyzer (Agilent, Santa Clara, CA) was used to analyze cellular bioenergetics. Cells were plated in XF 96-well plates (Agilent) at a density of 25,000 cells/well and adhered to the plate at 37 °C, 5% CO2, for 4–8 hours before treatment with OT-82 or DMSO for 20 hours. The Glycolytic Rate Assay was performed according to manufacturer’s instructions and the Mito Stress Test was performed as previously described.(14 (link),43 (link)) Each assay was performed at least three times with at least three biological replicates.
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