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7 protocols using anti kras

1

Western Blot Analysis of Protein Targets

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Protein samples (10 μg) were separated on a 12.5% sodium dodecyl sulfate polyacrylamide gel and loaded and run at 30 mA for 120 min. Samples were then blotted onto 0.45-μm nitrocellulose membranes (Catalog number 162–0114, Bio-Rad, Hercules, CA). The membranes were incubated overnight at 4 °C with the following diluted antibodies: anti-KRAS (Catalog number 60309-1-Ig, Proteintech, Chicago, IL) at 1:500, anti-PTEN (Catalog number 22034-1-AP, Proteintech) at 1:250, anti-FOXP1 (Catalog number ab16645, Abcam) at 1:500, anti-ERα (Catalog number; ab17087, Abcam) at 1:100 and anti-β-actin (Catalog number A5441, Sigma Aldrich) at 1:500. The membranes were then incubated with anti-mouse or rabbit IgG HRP-linked Antibody (Catalog number 7076, Cell Signaling Technology, Beverly, MA). Protein bands on the same membranes were visualized using enhanced chemiluminescence (ChemiDoc XRS, Bio-Rad) according to the manufacturer’s protocol. Band intensity was analyzed with Molecular Imager, Image Lab Ver.3.0.1 (Bio-Rad).
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2

Western Blotting Analysis of KRASG12D Expression in Organoids

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The KRASG12D expression of organoids was determined by western blotting analysis. After dissociating organoids from BME gel by TrypLE express and harvesting the cells, cells were washed with PBS buffer, then lysed in 0.5% Triton buffer (20 mM Tris, pH 8.0, 137 mM NaCl, 5% glycerol, 0.5% Triton X-100, Protease Inhibitor (Sigma, P8340)), and centrifuged for 10 min at 4 °C. Total protein was quantified with BCA assay (Thermo Fisher, 23227). Equal amounts of the protein were mixed with 2× Laemmli sample buffer (BioRad, 161-0737), incubated at 95°C for 5 min, and then subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS‒PAGE). Western blotting was carried out following a standard protocol. The membrane was incubated with primary antibody in TBST buffer at 4°C overnight, followed by incubation with corresponding horseradish peroxidase-conjugated secondary antibody for 1 h at room temperature, and then visualized using the SuperSignal West Pico PLUS Chemiluminescent Substrate (Thermo Fisher, 34580). The following antibodies were used: anti-KRAS at 1:1000 (Proteintech, 12063-1-AP); anti-RASG12D at 1:1000 (Cell Signaling Technology, 14429); anti-β-actin at 1:5000 (Sigma, A5441); goat-anti-rabbit IgG at 1:5000 (Jackson ImmunoResearch, 111-035-003), and goat-anti-mouse IgG at 1:5000 (Jackson ImmunoResearch, 115-035-003).
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3

Protein Expression Analysis by Western Blot

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Proteins were isolated, subjected to SDS-page, transferred onto PVDF membranes and incubated with antibodies anti-SIAH1 (Abcam, Cambridge, MA, USA), anti-SFRP2 (Cell Signaling Technology, Danvers, MA, USA), anti-KRAS (Proteintech, USA), anti-Ki-67 (Abcam, Cambridge, MA, USA), anti-p27, anti-p21, anti-cyclinD1 (Bioworld Technology Inc. St. Louis Park, MN, USA). LamB1 and a-tubulin (Sigma, Saint Louis, MO, USA) were used as loading controls. Then, the membranes were detected by chemiluminescence. All operations above were performed in accordance with standard methods.
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4

Signaling Pathways in KRAS-Driven Cancers

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MDA-MB-231 (KRASG13D), SW1116 (KRASG12A), SW480 (KRASG12V), Hela (KRASwt), SW48 (KRASwt) and Colo320 (KRASwt) cells were grown in Dulbecco’s modified Eagle medium with 10% foetal calf serum (FCS; all from Gibco/Invitrogen, USA). Trametinib and Deltarasin were from Selleckchem, Simvastatin was from Sigma, Leptomycin B was from Beyotime, China. MG132 and Doxycycline were from MedChemExpress. The following antibodies were used for WB, Co-IP, IF and IHC staining: Anti-YAP, anti-MEK1/2, anti-pERK1/2, anti-Lamin B, anti-IQGAP1 and anti-Ki-67 were all from Abcam. Anti-GAPDH and anti-HA were from Santa Cruz. Anti-LATS1 and anti-β-TrCP (WB/Co-IP) were from Cell Signaling Technology and anti-β-TrCP (IF) was from Sangon Biotech, China. Anti-pMEK1, anti-CYR61 and anti-Flag were from Sangon Biotech. Anti-KRAS was from Proteintech.
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5

Antibody Dilutions for Immunofluorescence and Western Blot

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The following antibodies were used at the dilutions specified—immunofluorescent (IF) or Western blot analysis (WB): anti-Arl13b, 1:2000 IF (clone N295B/66, UC Davis/NIH NeuroMab Facility), anti-Ac3 (gift from Young-Goo Han laboratory), anti-Siah2, 1:200 IF (Santa Cruz Biotechnology, cat. no. SC81787); anti-Tag1, 1:50 IF (UC Davis/NIH NeuroMab Facility, cat. no. 4D7/TAG1); anti-β-actin, 1:20000 WB (Sigma, cat. no. A2228); and anti-phospho-Mek1/2, 1:500 IF (Cell Signaling, cat. no. 9121); anti-H-Ras, 1:500 WB (Abcam, cat. no. ab32417); anti-N-Ras, 1:500 WB (Abcam, cat. no. ab77392); anti-K-Ras, 1:2000 WB (Proteintech, cat. no. 12063-1-AP); anti-vitronectin, 1:200 IF (Thermofisher cat. no. MA5-24083); anti-integrin β1 (Biolegend. Clone HMβ1-1); anti-myc 1:2000 WB (Thermofisher, cat. no. PA1-981); anti-HA 1:2000 WB (Biolegend, clone 16B12).
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6

Western Blot Analysis of KRAS and CDC42

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Protein lysates were prepared, subjected to SDS-PAGE, transferred to PVDF membranes, and then blotted according to standard methods with anti-KRAS (Proteintech, USA) and anti-CDC42 (Bioworld Technology, St. Louis Park, MN, USA). Chemiluminescent signals were detected by Supersignal West Pico and exposure to autoradiography (HyBlot CL). A monoclonal anti-a-Tubulin antibody (Sigma, St. Louis, MO, USA) was taken as inner control to confirm the equal loading of protein.
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7

Analyzing Kinase Signaling Pathways

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Dulbecco’s modified Eagle’s medium (DMEM), fetal bovine serum (FBS), and penicillin/streptomycin were obtained from Gibco® Life Technologies. The following antibodies were used: anti-α-tubulin (#ab52866, Abcam), anti-tAKT (#2920, Cell Signaling), anti-pAKTS473 (#4060, Cell Signaling), anti-pERKT202/Y204 (#9106, Cell Signaling), anti-FLAG (#F3165, Sigma Aldrich), anti-GAPDH (#398600, Invitrogen), anti-GST (own antibody), anti-γ-tubulin (#T5326, Sigma Aldrich), anti-His (#MA5-33032, Thermo Fisher), anti-KRAS (#12063-1-AP, Proteintech), anti-NRAS (#EB08365, Erest Biotech) and anti-SIN1 (#2746272, Merck Millipore). The secondary antibodies IRDye® 800CW donkey anti-rabbit IgG and IRDye® 680RD donkey anti-mouse IgG were purchased from Li-Cor and analyzed in the Odyssey® XF Imaging System. The nucleotides mGDP (methylanthraniloyl- or mant-GDP), mGppNHp (mant-GppNHp) and GppNHp were obtained from Jena Bioscience GmbH. Human EGF and GDC-0941 were obtained from Merck (Darmstadt, Germany).
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