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6 protocols using bca protein colorimetric assay kit

1

Quantifying Lung Protein Expression

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Total proteins from lung tissue were extracted with RIPA lysate containing protease inhibitors (Cwbio, Jiangsu, China) and their concentration was determined using a BCA protein colorimetric assay kit (Elabscience, Wuhan, China). A total of 25 µg protein from each sample was separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto polyvinylidene difluoride (PVDF) membranes. After blocking with 5% fat-free milk in TBST for 1 h at room temperature, the membranes were incubated overnight at 4 °C with the following primary antibodies: anti-collagen I (1:250, Abcam; ab21286), anti-ACTA2 (1:1000, ZEN-BIOSCIENCE; 380,909), anti-MMP13 (1:1000, ZEN-BIOSCIENCE; 820,098), anti-TGFB1 (1:1000, ZEN-BIOSCIENCE; 346,599) and anti-IL1B (1:5000, Abcam; ab9722). β-Actin was used as an internal control. The membranes were washed with TBST for three times and then incubated with secondary antibodies (1:5000, Servicebio, gb23303), for 1 h at room temperature, and then exposed to radiography film.
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2

Western Blot Analysis of Protein Expression

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NP-40 lysis buffer (Solarbio, China), PMSF(Solarbio, China) ,and Protease Inhibitor Cocktail(Solarbio, China)were used to extract proteins. Total proteins were transferred to PDVF membranes (GE, America) from 10% SDS–PAGE after determining the protein content (BCA Protein Colorimetric Assay Kit, Elabscience, China). Membranes were incubated in primary antibodies α-SMA (1:1000), Smad2 (1: 2000), Smad3 (1: 1000), phospho-Smad2 (1: 5000), phospho-Smad3 (1: 2000), and p38MAPK (1: 500) at 4 °C overnight. After washing, membranes were incubated with secondary antibodies (Rabbit anti-Goat IgG–HRP, abisin, China at room temperature for 2 h. Chemiluminescence was performed with Thermo ECL (elabscience, China and visualization was done with a Tanon gel imager. We used the Image J software to quantify using β-actin as an internal standard. This experiment was repeated three times to obtain average values.
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3

Antimicrobial Activity Evaluation Protocol

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S. aureus (ATCC 25923), B. subtilis (ATCC 11774), B. cereus (ATCC 14579), E. coli (ATCC 25922), P. aeruginosa (ATCC 15442), S. typhimurium (ATCC 14028), C. lusitaniae (ATCC 34449), and A. niger (ATCC 16888) strains were provided by the Affiliated Hospital of Qingdao University. CPC, fetal calf serum (FCS), Eagle’s minimum essential medium (EMEM), and agar powder were purchased from Sangon Biotech Co., Ltd. (Shanghai, China). CHA and bovine serum protein (BSA) were purchased from Solarbio Science & Technology Co., Ltd. (Beijing, China). LB broth medium, Sabouraud dextrose broth medium, and D/E (Dey/Engley) neutralizing broth were purchased from Hope Bio-Technology Co., Ltd. (Qingdao, China). Glutaraldehyde solution (2.5%, v/v) was purchased from Macklin Biochemical Co., Ltd. (Shanghai, China). Filmtracer™ LIVE/DEAD™ Biofilm Viability Kit was purchased from Thermo Fisher Scientific (China) Co., Ltd. (Shanghai, China). BCA Protein Colorimetric Assay Kit was purchased from Elabscience Biotechnology Co., Ltd. (Wuhan, China). New Zealand white rabbits were purchased from Lukang Pharmaceutical Co., Ltd (Qingdao, China). All the other chemicals and reagents were of analytical grade.
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4

Western Blot and Immunoprecipitation Protocol

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Cell lysis buffer for Western and IP (P0013, Beyotime) was used to lyse HGC27 and AGS cells after they had been exposed to various doses of NTP for 24 h. The BCA protein Colorimetric Assay Kit (E-BC-K318-M, Elabscience) was subsequently utilized to determine the total protein. After the protein was separated by electrophoresis, the membrane was transferred using polyvinylidene difluoride (PVDF) at an ice bath temperature. Five percent skim milk was used to block the portions. In a 4 °C shaker, the matching antibodies were incubated overnight. After rinsing with Tris-buffered saline and Tween (TBST), the film was treated with secondary antibodies (S0002, Affinity) for 1.5 h at room temperature. Finally, the imaging system was used to build the improved ECL chemiluminescent substrate kit (36222, Yeasen). For some of the PVDF membranes, Western blot fast stripping buffer (PS107, Epizyme) was used. After completing Western blot luminescence detection, the PVDF membranes were rinsed with TBST for 5 min. Add 10 mL of fast stripping buffer to cover the membrane and rinse for 20 min. The stripping solution was removed, and TBST was added to rinse the PVDF membrane for 5 min. The membrane was sealed with skim milk powder for 2 h, the PVDF membrane was washed with TBST, and then the other antibodies were added again. The gray value was analyzed and calculated using ImageJ software.
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5

Exosome-Mediated Osteogenic Differentiation

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To investigate osteogenic differentiation, BMSCs were cultured on DE-FS (n = 6 each group) loaded with or without exosomes supplemented with osteogenic media for 2 weeks. Then, the cells underwent 2 times of PBS washing, followed by 4% paraformaldehyde fixation for 5 min, and incubation with 2% Alizarin Red S (ARS) solution (Sigma) for 30 min. Finally imaged using a microscope (Nikon, Tokyo, Japan). To quantify the calcium amount on the DE-FS, the red matrix precipitate was solubilized in 10% cetylpyridinium chloride (Sigma). The eluted stain was read at 562 nm. In addition, alkaline phosphatase (ALP) activity of BMSCs that cultured on DE-FS (n = 6) loaded with or without exosomes undergo differentiation by incubation in osteogenic medium for 7 days was detected using an ALP Activity Assay Kit (Elabscience, Wuhan, China). The wavelength of 520 nm was set for detection in microplate reader. The data was normalized to the total protein contents determined by a BCA Protein Colorimetric Assay Kit (Elabscience).
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6

Quantification of Mitochondrial Dynamics Proteins

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BCA Protein Colorimetric Assay Kit (Elabscience Biotechnology Co., Ltd., China) was used to quantify the total protein of brain cortex tissues and SY5Y cells. Samples with an equal amount of protein were loaded and separated via sodium dodecyl sulfate‐polyacrylamide gel electrophoresis (SDS‐PAGE). The proteins were transferred to the appropriate polyvinylidene fluoride membrane (Millipore, USA), blocked with 5% skimmed milk for 1 h, and thens incubated with diluted antibodies at 4°C overnight. For the in vivo experiments, Drp1 (1:2000), Fis1 (1:1500), MFF (1:8000), OPA1 (1:2000), Mfn1 (1:1000), Mfn2 (1:2000), and β‐actin (1:5000) antibodies were purchased from Proteintech Group, Inc., China. Meanwhile, for the in vitro experiments, the antibodies included Drp1 (1:800; AiFang Biological, China), Fis1 (1:1500; Bioss, China), OPA1 (1:1000; AiFang Biological, China), Mfn1 (1:1000; Affinity, China), Mfn2 (1:500; AiFang Biological, China), and SENP6 (1:1000; Abcam, USA). Furthermore, MFF (1:2000), SUMO1 (1:2000), SUMO2/3 (1:500), SENP1 (1:2000), SENP2 (1:1000), SENP3 (1:800), SENP5 (1:3000), and β‐actin (1:5000) were obtained from Proteintech Group, Inc., China. Then, the membranes were washed and incubated with secondary antibodies for 2 h at room temperature. After rewashing with TBST buffer, the membranes were added ECL reagent to enable the detection of the protein bands.
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