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53 protocols using e200 microscope

1

Behavioral Assays for Lifespan Evaluation

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Behavior parameters related to health span were evaluated (15 (link)). Pharyngeal pumping was assessed with a Nikon E200
microscope by observing the number of pharyngeal contractions during a 60-s
interval in wild-type young adults.
Thrash frequency was selected for analysis of locomotion. Wild-type young adults
from control or GEE treatments were individually picked and placed in a drop of
M9. The worms were allowed to adapt for 1 min and then the number of thrashes
were quantified with a Nikon E200 microscope during a 20-s interval. A thrash
was defined as a change in the direction of bending at the middle of the
body.
Analyses were carried out in three independent assays. Thirty nematodes were
examined per group.
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2

Quantifying Colonic Cell Apoptosis

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Each sample was photographed under the Nikon E200 microscope (Nikon Co. Ltd., Tokyo, Japan). Apoptosis of colonic cells was measured via TUNEL assay. We dewaxed and hydrated the paraffin-embedded colon slices, performed antigen retrieval using proteinase K, and then incubated the colonic sections with TUNEL assay kit reagents per manufacturer’s protocol. The nuclei were developed with DAB and hematoxylin; blue represents apoptotic cell. A photomicrograph of each sample was obtained with a Nikon E200 microscope.
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3

Matrigel Cell Invasion Assay Protocol

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Matrigel cell invasion assays were performed according to the manufacturer's instructions (Corning, Acton, MA, USA). A 100-μl cell suspension (5×105 cells) was added to the upper chamber, while the lower chamber was filled with RPMI 1640 medium containing 10% fetal calf serum. Each upper and lower chamber was separated by a 8-μm porous polycarbonate membrane. The cells were incubated for 24 h at 37°C in a humid atmosphere with 5% CO2. After the medium was discarded, the cells were fixed with methanol for 30 min and stained with hematoxylin (Sigma). For each filter, the numbers of cells that invaded to the lower surface of the porous membrane in five different fields of 400× magnification were counted randomly using a Nikon E200 microscope. The mean was calculated from data obtained from each experiment repeated three times.
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4

Juglone-Induced Nematode Mortality

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Young-adult worms of wild-type (N2), nhr-49(nr2041), and ador-1(ox489) were exposed to 100 uM of juglone, also called 5-hydroxy-1,4- naphthoquinone (IUPAC), a generator of reactive oxygen species (ROS) [37 (link)], this concentration is supposed to kill approximately 50% of the nematodes (LD50), after 1 hour exposure [38 ]. Juglone was prepared in EtOH (1% final concentration). After 1 hour at 20°C, 100 nematodes per treatment with Ilex paraguariensis were assessed with a Nikon E200 microscope (Tokyo, Japan). Animals that reacted to a mechanical stimulus were scored as alive, and non-responding animals were considered to be dead (Fig 5). Analyses were carried out in five independent assays. Results are shown as percentage of alive animals.
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5

Histological Analysis of Cardiac and Skeletal Muscle

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Freshly excised hearts and skeletal muscles were cut in half along the transverse plane and placed into OCT medium to be frozen in liquid nitrogen-cooled isopentane (− 160 °C) and stored at − 80 °C. Short-axis cross-sections of the hearts were sectioned at 7 µm and stained with hematoxylin and eosin using standard histochemical procedures. Images were collected on a Nikon E200 microscope.
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6

Semiquantitative Scoring for ISH and IHC

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The present study used the same semiquantitative scoring method for ISH and IHC (14 (link),15 (link)). The sections were semiquantitatively analyzed independently by two pathologists. All staining was observed using an E200 microscope (Nikon, Tokyo, Japan). The staining intensity was scored as 0 (negative), 1 (weak), 2 (moderate) or 3 (strong). The staining density score was based on the percentage of positive cells, as follows: 0 (0%), 1 (1–10%), 2 (11–50%), 3 (51–80%) and 4 (81–100%). The staining intensity and density scores were multiplied and used as the overall score. An overall score of >3 was considered to indicate positive NOR1 expression; scores of ≤3 indicated negative NOR1 expression.
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7

Immunohistochemical Analysis of TNS1 in BCa

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The sections of BCa and normal adjacent tissues were deparaffinized and permeabilized. Then, the specimens were incubated with the anti-TNS1 antibody (Proteintech, Wuhan, China) overnight at 4oC. Then, we incubated the specimens with the secondary antibody (Proteintech, Wuhan, China). The color was developed with DBA and the stained samples were imaged with a Nikon E200 microscope.
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8

Wing Sensory Morphology Characterization

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Wings were dissected dry, transferred to glass microscope slide with isopropanol and mounted in AquaPolymount (Polysciences, Inc.). Anterior wing margin bristles and sensillae were viewed under brightfield optics using a Nikon E200 microscope at 400× magnification. For each wing, we counted the number of twin campaniform sensillae, stout bristles, dorsal recurved bristles, ventral recurved bristles, ventral slender bristles, and domed sensillae on longitudinal vein L3 and on the anterior crossvein. Sample size for each genotype varied from 5 to 32. Median values were subjected to a Kruskal-Wallis test. For those traits with a P-value < 0.001, a Mann-Whitney U test was performed on paired combinations of all genotypes.
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9

Fluorescence Microscopy of PHA-Producing Cells

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Bacterial suspension (10 µL) was collected after the incubation period in a PHA production medium, placed on a microscope slide, air dried, and fixed by heating in a Bunsen burner flame. The so-fixed smear was stained with a SYBR-Nile Red solution in 50% methanol for 15 min. Afterward, the glass slide was rinsed with ddH2O and air-dried in darkness. A cover slide was fixed on top of the smear with a drop of CitiFluor AF1 anti-fade solution. Cells were observed under 1000 magnification with green (510–560 nm) and blue light (450–490 nm) excitation on a Nikon E-200 microscope with a 100-W Hg lamp and 100 × CFI 60 oil immersion objective. Images were captured with a digital DS-Fi3 high-definition color microscope camera equipped with a 5.9-megapixel CMOS image sensor and a filter block of wavelengths: EX 330–380, DM 400, BA 420.
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10

Histological Analysis of Lung Tissue

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After lungs had been excised and fixed in 4% paraformaldehyde, they were sectioned and stained with H&E or periodic acid-Schiff. The samples were examined for inflammatory cell infiltration, tissue damage, goblet cell metaplasia, and mucus production by using a Nikon E200 microscope.
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