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Alui and mboi

Manufactured by New England Biolabs

AluI and MboI are Type II restriction endonucleases. AluI recognizes and cleaves the DNA sequence AGCT, while MboI recognizes and cleaves the DNA sequence GATC. Both enzymes are commonly used in molecular biology applications such as DNA cloning, fragment analysis, and genetic mapping.

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4 protocols using alui and mboi

1

Telomere Length Measurement by TRF Analysis

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Telomere gels were performed using telomere restriction fragment (TRF) analysis. Genomic DNA was digested using AluI and MboI (NEB). 4–10 μg of DNA was run on a 1% PFGE agarose gel (Bio-Rad) in 0.5× TBE buffer using the CHEF-DRII system (Bio-Rad) at 6 V cm−1; initial switch time 5 s, final switch time 5 s, for 16 h at 14 °C. The gel was then dried for 4 h at 50 °C, denatured in a 0.5 N NaOH 1.5 M NaCl solution, and neutralized. Gel was hybridized with 32P-labelled (CCCTAA)6 oligonucleotides in Church buffer overnight at 42 °C. The next day, the membrane was washed four times in 4× SSC buffer, exposed onto a storage phosphor screen (GE Healthcare) and scanned using STORM 860 with ImageQuant (Molecular Dynamics). Telomere length was determined using TeloTool software35 (link).
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2

Telomere Length Analysis by TRF

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Telomere gels were performed using telomere restriction fragment (TRF) analysis. Genomic DNA was digested using AluI and MboI (NEB). Then, 4–10 μg of DNA was run on a 1% PFGE agarose gel (Bio-Rad) in 0.5× TBE buffer using the CHEF-DRII system (Bio-Rad) at 6 V cm−1; the initial switch time was 1 s, and the final switch time 6 s, for 17 h at 14 °C. The gel was then dried for 2 h at 60 °C, denatured in a 0.5 M NaOH/1.5 M NaCl solution, and neutralized. Gel was hybridized with 32P-labeled (TTAGGG)4 oligonucleotides in Church buffer overnight at 55 °C. The next day, the membrane was washed three times in 2× SSC buffer and once in 2× SSC 0.5% SDS, exposed onto a storage phosphor screen and scanned using Typhoon 9400 PhosphoImager (GE Healthcare). Telomere length was determined using TeloTool software.
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3

Telomere Length Determination Using TRF Analysis

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Telomere gels were performed using telomere restriction fragment (TRF) analysis. Genomic DNA was digested using AluI and MboI (NEB). Next, 4–10 μg of DNA was run on a 1% PFGE agarose gel (Bio-Rad) in 0.5× TBE buffer using the CHEF-DRII system (Bio-Rad) at 6 V cm−1; initial switch time 1 s, final switch time 6 s, for 17 h at 14 °C. The gel was then dried for 2 h at 60 °C, denatured in a 0.5 N NaOH 1.5 M NaCl solution and neutralized. The gel was hybridized with 32P-labeled (TTAGGG)4 oligonucleotides in Church buffer overnight at 55 °C. The next day, the membrane was washed three times in 2× SSC buffer and once in 2× SSC 0.5% SDS, exposed onto a storage phosphor screen and scanned using Typhoon 9400 PhosphoImager (GE Healthcare).
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4

Telomere Length Analysis by TRF

Check if the same lab product or an alternative is used in the 5 most similar protocols
Telomere gels were performed using telomere restriction fragment (TRF) analysis. Genomic DNA was digested using AluI and MboI (NEB). 4-10 μg of DNA was run on a 1% PFGE agarose gel (Bio-Rad) in 0.5×TBE buffer using the CHEF-DRII system (Bio-Rad) at 6V cm-1; initial switch time 1 second, final switch time 6 seconds, for 17hrs at 14°C. The gel was then dried for 2hrs at 60°C, denatured in a 0.5 N NaOH 1.5 M NaCl solution, and neutralized. Gel was hybridized with 32P-labelled (TTAGGG)4 oligonucleotides in Church buffer overnight at 55°C. The next day, the membrane was washed three times in 2×SSC buffer and once in 2x SSC 0.5% SDS, exposed onto a storage phosphor screen and scanned using Typhoon 9400 Phospholmager (GE Healthcare). Telomere length was determined using TeloTool software.
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