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Phiv zsgreen plasmid

Manufactured by Addgene

The PHIV-ZsGreen plasmid is a laboratory tool used for gene expression studies. It contains the ZsGreen fluorescent protein gene, which can be used to visualize and track the expression of genes of interest in cells.

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2 protocols using phiv zsgreen plasmid

1

Proliferation Assay for Small Molecule Inhibitors

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All suspension cells were plated in 96-well plates in triplicate at 5,000–10,000 cells per well and treated for 72 hours with vehicle or the indicated concentrations of STM2457 and STM2120 (0.04-50 μM). On day 4, an equal volume for all wells was split using fresh media and compound, such that the resulting cell density in each well matched the initial seeding density. Plates were measured on day 6 using CellTiter 96 AQueous Non-Radioactive Cell Proliferation Assay (Promega) in order to calculate the relative cell proliferation. All the compounds were dissolved in DMSO.
For the rescue experiments, cDNA was obtained by reverse transcription of MOLM13 cell RNA with Supercript III (ThermoFisher Scientific), then the SP1 full-length coding sequence was amplified by PCR and cloned into pHIV-ZsGreen plasmid (Addgene 18121) by Gibson assembly (Gibson Assembly Cloning Kit, NEB), using the HpaI site. MOLM13 cells were transduced with the SP1 or empty lentiviral vectors, then GFP+ cells were isolated by flow cytometry sorting after 4 days and employed in proliferation and western blot assays as descripted above. All data in this section were plotted using GraphPad Prism (Version 9).
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2

Engineered METTL1 for RNA Methylation

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cDNA was obtained by reverse transcription of A549 RNA with Superscript III (Thermo Fisher), then the METTL1 full-length coding sequence was amplified by PCR and cloned into pHIV-ZsGreen plasmid (Addgene plasmid #18121) using restriction sites XbaI and NotI. In order to generate an shRNA-resistant METTL1 sequence, synonymous substitutions were introduced in the codons corresponding to shRNA binding sites by long DNA fragment synthesis (GeneArt Strings; Thermo Fisher) of the N-terminal portion of METTL1 (up to NheI site). The in vitro synthesized fragment was swapped into pHIV-ZsGreen-METTL1 using restriction sites NotI and NheI. The same approach was combined to codon mutagenesis to generate the catalytically inactive METTL1 variant EIR/AAA (amino acids 107-109, that form the SAM-binding pocket of the enzyme; see Figure S2I). Primer and long oligonucleotide sequences are listed in Table S8.
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