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4 protocols using anti nicastrin

1

Immunoblot Analysis of Alzheimer's Proteins

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Protein extracts were sonicated, centrifuged at 13,000 rpm for 45 min at 4oC, and supernatants used for immunoblot analysis, as previously described (5 , 7 (link), 8 (link)). Actin was always used as an internal loading control. Primary antibodies used were as follows: anti GSAP full length (1:200) and GSAP-16kDa (1:150) (Thermo Scientific, Waltham, MA); anti-TMP21 (1:200) (Santa Cruz Biotech, Dallas, Texas); anti-APP (1:200), anti-APH-1 (1: 200) anti- CTF-α and anti-CTF-β(1:200) (Millipore, Billerica, MA, USA); anti-PS1 (1: 200), anti-Nicastrin (1: 200) (Cell signaling, Danvers, MA); anti-Pen-2 (1: 200) (Invitrogen, Carlsbad, CA); anti-β-actin (1:200) (Santa Cruz Biotech, Dallas, Texas). IRDye infrared secondary antibodies were from LI-COR Bioscience (Lincoln, Nebraska).
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2

Western Blot Analysis of Brain Proteins

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Soluble fraction of brain lysates was used for western blot. Fifteen to thirty micrograms of brain lysates were separated by SDS-PAGE on SDS gels (5% stacking, 10~15% resolving) and transferred to nitrocellulose membranes (110V constant for 90min, wet transfer). Some of the protein samples were separated on BoltTM 4–12% Bis-Tris Plus gels with MES running buffer (200 V constant, for 25 min) and transferred to nitrocellulose membranes using Bio-Rad wet transfer system (100 V constant for 1 h). The membranes were blocked with 5% skim milk in TBST (200mM Tris, 3M NaCl, 1% TWEEN-20, pH 7.6). The membranes were labeled with primary antibodies (anti-GAPDH, 1:1000, Bethyl #A300-641A, RRID:AB_513619; anti-PEN2, 1:500 ,Cell Signaling #8598, RRID:AB_11127393; anti-APH-1, 1:100, Thermo Fisher #PA1-2010, RRID:AB_2227105; anti-Nicastrin, 1:1000, Cell Signaling #5665, RRID:AB_10694688; anti-BACE1, 1:1000, Cell Signaling #5606, RRID:AB_1903900; anti-β-amyloid, 1:100, BioLegend #803002, RRID:AB_2564654), for overnight at 4°C and then labeled with the HRP-conjugated secondary antibodies (anti-Rabbit IgG HRP-conjugate, 1:5,000, Promega #W4011, RRID:AB_430833; anti-mouse IgG Secondary antibody HRP, 1:5000, Thermo Fisher #31430, RRID:AB_228307). Chemiluminescence images were captured by ImageQuant LAS 4000 (Fuji, RRID:SCR_014246).
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Comprehensive Antibody Validation for Alzheimer's Research

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Primary antibodies included anti-Aβ 4G8 (SIG-39220, BioLegend, San Diego, CA, USA), anti-SPIN90 (generated in our laboratory), anti-Rab11 (ab3612, Abcam, Cambridge, UK), anti-GFP (sc-9996, Santa Cruz Biotechnology, Dallas, TX, USA), anti-APP (MAB348, EMD Millipore, Darmstadt, Germany), anti-BACE1 (B0681, Sigma, St. Louis, MO, USA), anti-Nicastrin (5665, Cell Signaling Technology, Danvers, MA, USA), anti-β-actin (sc-47778, Santa Cruz Biotechnology, Dallas, TX, USA), anti-p35/p25 (2680, Cell Signaling Technology, MA, USA) and anti-tubulin (T6199, Sigma, St. Louis, MO, USA). Secondary antibodies included horseradish peroxidase (HRP)-conjugated donkey anti-mouse (115-035-006) and anti-rabbit antibodies (111-035-006, Jackson Laboratory, Bar Harbor, ME, USA). Unless otherwise noted, all chemicals were purchased from Sigma.
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4

Comprehensive Protein Analysis in Neurological Diseases

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Samples were separated on 4–20% SDS-PAGE and transferred onto nitrocellulose membranes. The following antibodies were used in Western blots: anti-APP C-terminal AbD (Zymed), anti-APP N-terminal 22C11 (Millipore), anti-sAPPβ (antibodies-online ABIN927102), anti-APPpThr668 (Cell Signaling Technology), anti-Bace1 (Cell Signaling Technology), anti-Ps-1 (Cell Signaling Technology), anti-Ps-2 (Cell Signaling Technology), anti-Pen2 (Cell Signaling Technology), anti-Nicastrin (Cell Signaling Technology), anti-Synaptotagmin (Sigma-Aldrich), anti-Synaptophysin (Cell Signaling Technology), anti-Rab3A (Cell Signaling Technology), anti-Synaptobrevin/Vamp2 (Synaptic System), anti-Vdac (Cell Signaling Technology), Rab4 (Cell Signaling Technology), transferrin receptor (Sigma-Aldrich), anti-NmdaR2A (Cell Signaling Technology), anti-NmdaR2B (Cell Signaling Technology), anti-Gapdh (Cell Signaling Technology), anti-Nsf (Cell Signaling Technology), anti-Snap25 (Cell Signaling Technology), anti-Sx1b (Synaptic System). For the experiment reported in Fig. 4, the protein samples were separated on a 16.5% Tris-Tricine SDS-PAGE, to obtain a better separation of APP-CTF species.
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