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5975c ms system

Manufactured by Agilent Technologies

The 5975C MS system is a gas chromatography-mass spectrometry (GC-MS) instrument manufactured by Agilent Technologies. It is designed to provide high-performance mass spectrometry analysis for a wide range of applications. The core function of the 5975C MS system is to separate, identify, and quantify chemical compounds in complex samples.

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5 protocols using 5975c ms system

1

Detailed GC-MS Analysis of Complex Samples

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GC-MS was performed on an Agilent 7890A gas chromatograph with a 5975 C MS system. An HP-5 (25-m by 320-μm by 0.25-μm-inside-diameter [i.d.]) fused silica capillary column (Agilent J&W Scientific, Folsom, CA) was used with the open split interface. The injector, transfer line, and ion source temperatures were maintained at 220, 220, and 250°C, respectively. Oven temperature was programmed at 70°C for 0.2 min and increased at 10°C/min to 270°C, where it was sustained for 5 min, and further increased at 40°C/min to 310°C, where it was held for 11 min. The MS was operated in the electron impact ionization mode at 70 eV. Mass data were acquired in full scan mode from m/z 40 to 600 with an acquisition rate of 20 spectra per second. To detect retention time shifts and enable Kovats retention index (RI) calculation, a standard alkane series mixture (C10 to C40) was injected periodically during the sample analysis. RIs are relative retention times normalized to n-alkanes eluted adjacently. The injector port temperature was held at 250°C, and the helium gas flow rate was set to 1 ml/min at an initial oven temperature of 50°C. The oven temperature was increased at 10°C/min to 310°C for 11 min, and mass data were acquired in full scan mode from m/z 40 to 600 with an acquisition rate of 20 spectra per second.
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2

Analysis of SEO Volatile Aroma Components

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The volatile aroma components of SEO were measured based on a previous study [4 (link)]. Briefly, 1 μL of essential oil was injected at a split ratio of 1:50 into an Agilent 7890A GC-FID system (Agilent J&W, Santa Clara, CA, USA). The volatile aroma components were separated using an Agilent J&W DB-Wax column (60 m × 0.25 mm i.d., 0.25-μm film thickness) under a helium stream at a flow rate of 32 cm/s. The initial oven temperature was 40 °C, which was maintained for 2 min, then increased to 200 °C at a rate of 2 °C/min, and finally held for 38 min. The GC injector and FID were set at 250 °C. Aroma components were identified based on linear retention indices (RIs) upon measurement of the homologous series of C7–C30 alkanes, followed by comparison of the MS patterns of the peak with MS data from the National Institute of Standards and Technology (NIST) MS Library, Version 2008, and MS patterns of authentic standards. The MS patterns of the peaks were acquired using an Agilent 5975C MS system under the following conditions: both ion source and interface temperatures were set at 230 °C, electron impact ionization at 70 eV, and mass acquisition range of 29–450 amu. The composition was expressed as the relative concentration of the FID peak area response. All analyses were performed in triplicate.
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3

Comprehensive Wine Metabolite Analysis

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General parameters (glucose, ethanol, glycerol, acetic acid, malic acid, lactic acid, and succinic acid) were determined by high-performance liquid chromatography (HPLC, 1200 series, Agilent Technologies, Inc., Palo Alto, CA, United States) as described by Duan et al. (2015) . The system was equipped with an HPX-87H Aminex ion-exchange column (300 mm × 7.8 mm, Bio-Rad Laboratories, Hercules, CA, United States) with 5 mM sulfuric acid as the mobile phase. The volatile compounds of the wines were determined by headspace solid-phase microextraction coupled with gas chromatography-mass spectrometry (HS-SPME-GC-MS) as previously described (Zhang et al., 2011 (link); Xu et al., 2015 (link)). An Agilent 6890A equipped with a 5975C MS system and an HP-INNOWAX column (60 m × 0.25 mm × 0.25 μm) was used in this system. The aroma compounds were identified by a comparison of the retention indices (RI) of reference standards and mass spectra that matched in the NIST 08 MS database. The quantification was applied with the calibration curves of aroma standards as described by Xu et al. (2015) (link). Analyses were performed in triplicate. Significant differences of metabolites among the treatments were identified using one-way analysis of variance (ANOVA) followed by Duncan’s test (p < 0.05) (SPSS 17.0, SPSS Inc., Chicago, IL, United States).
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4

Chemical Profiling of Imusil by GC-MS

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The chemical constituents present in the Imusil was identified using Gas chromatography and mass spectrometry(GC–MS) by Agilent 7890A GC system, 5975C MS system with the column of dimensions 30 m × 250 μm × 0.25 μm. The initial temperature was 40 °C with a hold time of 2 min. The temperature was raised to 270 °C with a rate of 10 °C/min with a hold to time of 5 min. 1 μL of sample injected and the total run time was 37 min. The mass spectra of unknown peaks obtained from GC–MS were compared with the standard stored in GC–MS NIST library to identify the various chemical compounds present in the Imusil.
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5

GC-MS Analysis of Essential Oil Constituents

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Essential oil constituents were determined by GC-MS analysis. GC-MS analyses were carried out on an Agilent 7890A GC, coupled to Agilent 5975C MS system equipped with HP-5MS capillary column (30 m× 0.25 mm × 0.25 μm). Oven temperature was held at 50 °C for 5 min and then programmed to 150 °C at a rate of 3 °C/min, kept constant at 150 °C for 10 min and then increased to 250 °C at a rate of 3 °C/min. Injector and detector temperatures were adjusted to 250 and 280°C respectively. Injection Split ratio was 1/50. Helium was used as carrier gas with a linear velocity of 1.0 mL/min. Mass spectra (MS) were recorded in electron ionization mode at 70 eV and with a mass range of m/z 30-550. The components were identified by comparing linear Kovats indices, their retention times and mass spectra with those obtained from the MS library. The library search was carried out using Wiley GC-MS and NIST Library of Essential Oil Constituents. The LEO and REO were diluted in hexane: 1/30.
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