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7 protocols using glutathione sepharose 4b resin

1

Purification of GST-Tagged Proteins

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pGEX-Rho1, pGEX-RG2-164, pGEX-RG2-164 7A, and pGEX6P1-N-HA were transformed into BL21(DE3)-competent cells (New England Biolabs, C2527H) and grown overnight at 37°C in a starter culture. The starter cultures were then diluted 1:200 into 1-liter cultures, shaken for ~1.5 hours at 37°C until reaching an OD600 (optical density at 600 nm) of 0.6 to 0.8, induced with 100 μM isopropyl-β-d-thiogalactopyranoside (IPTG), and shaken for 20 to 24 hours at room temperature. The bacterial cultures were then pelleted by centrifugation, washed once with PBS, and flash-frozen and stored at −80°C until further processing. To harvest recombinant GST proteins, frozen bacteria pellets were lysed in lysis buffer [20 mM Hepes (pH 7.5), 150 mM NaCl, 5 mM MgCl2, 1% Triton, and 1 mM dithiothreitol (DTT) with protease/phosphatase inhibitors], sonicated in Bioruptor Pico (Diagenode), and clarified by centrifugation at 4°C. The clarified lysate was then incubated with Glutathione Sepharose 4B resin (Millipore Sigma, GE17-0756-01) for 2 hours at 4°C, washed, and then resuspended in storage buffer (Hepes buffered saline, 5 mM MgCl2, 1 mM DTT) with 33% glycerol.
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2

Biochemical Characterization of eIF Complexes

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GST pulldown assays were performed by attaching GST-fused h5MP1 and its derivatives to Glutathione Sepharose 4B resin (Millipore Sigma GE17–0756–01) and incubating with the partner proteins in GST-pulldown Binding Buffer (Singh and Asano, 2007 (link)). After washing the resin, the bound proteins were analyzed by SDS-PAGE followed by western blotting, along with a portion of in-put proteins. Co-IP in yeast was performed by preparing whole-cell extracts (WCE) from yeast expressing FLAG-tagged proteins in IP Buffer A and by immunoprecipitating proteins in the WCE through anti-FLAG M2 affinity resin (Millipore Sigma A2220) (Asano et al., 2000 (link)). The in-put and supernatant fractions were kept for the western blot analysis with immunoprecipitated fractions. In density gradient-velocity sedimentation analysis of eIF complexes in yeast, we cross-reacted the complexes by HCHO in culture, prepared and resolved the WCE fraction by fractionating on a 15-40% sucrose gradient and centrifugation at 39000 rpm for 4.5 hr (Singh et al., 2004 ). Gradient fractions were ethanol-precipitated and analyzed by western blotting with appropriate antibodies.
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3

Recombinant β-glucosidase expression in E. coli

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The recombinant pGEX-4T-1 vector containing S. griseus β-glucosidase gene (GST-tagged) in E. coli BL21 (DE3) was developed in a previous study [14 (link)]. Ampicillin, glycerol, Isopropyl-β-D-thiogalactopyranoside (IPTG), LB broth, p-nitrophenyl-β-D-glucopyranoside (pNPG), p-nitrophenol (pNP), cellobiose, fructose sucrose, tryptone, yeast extract, beef extract, CaCl2, DTT, KOH, MgCl2, (NH4)2S4, ZnSO4, Triton X-100, M PMSF, Lysozyme, Bradford reagent, and Glutathione Sepharose 4B resin were purchased from Sigma Aldrich (Ireland).
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4

Recombinant Defensin Protein Purification

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The pGEX-4 T-1 harboring recombinant defensin (pGEX-4 T-1-Def) was transformed into the BL21 (DE3) E. coli strain (Elgaied et al. 2017 (link); Elmenofy et al. 2020a (link)). Positive colonies were selected on the basis of their growth on Luria–Bertani (LB) agar plates supplemented with 50 µg/mL ampicillin. The 5 mL LB medium containing ampicillin was inoculated with a single isolated colony and grown overnight at 37 °C. The expression of the GST-defensin fusion was induced by the addition of 0.1 mM IPTG. The bacterial pellet was collected by centrifugation, and the recombinant protein was batch purified with Glutathione Sepharose 4B resin (Sigma, St Louis, USA). In an overhead shaker, the filtered bacterial lysate was incubated with 2 mL of glutathione Sepharose and left overnight at 4 °C. The unbound proteins were washed twice with 10 mL of GST binding buffer, followed by two washes with 10 mL of GST binding buffer containing 1% Triton X-100 to remove nonspecifically bound proteins. The bound recombinant GST-defensin peptide was eluted with 1 mL of elution buffer (50 mM Tris–HCl pH 8.0, 400 mM NaCl, and 10 mM reduced glutathione). The N-terminal GST-tag was cleaved by overnight digestion of thrombin, and then the purity of the recombinant protein was analyzed by Tris-Tricine gel electrophoresis, and its concentration was estimated by Bradford assay.
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5

Affinity Purification and Overlay Assay of Maize 14-3-3 Protein

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The cDNA of the maize 14-3-3 isoform GF14-6 (G-BOX FACTOR14-6) was cloned into the pGEX-2T vector, expressed in Escherichia coli as a GST-fused protein [35 (link)]. The GST-14-3-3 was immobilized onto a Glutathione Sepharose 4B resin (Merck KGaA, Darmstadt, Germany), and the 14-3-3 protein eluted by thrombin cleavage as already described [69 (link)]. The overlay assay was performed according to Visconti et al. [70 (link)], with slight modifications. Ten micrograms of two-phase partitioned plasma membrane material was subjected to SDS-PAGE and blotted onto a PVDF membrane. The membrane was blocked with 5% fatty-acid-free milk in buffer H (25 mM Hepes-OH, 75 mM KCl, 5 mM MgCl2, 0.1 mM EDTA, 1 mM DTT, 0.04% Tween-20, pH 7.5) and then incubated overnight at 4 °C in buffer H containing 3% fatty-acid-free milk and 50 µg/mL 14-3-3. The membrane was washed extensively with buffer H and incubated with the anti-GF14-6 antibody (1:600) in the same buffer. Immunodecoration was performed as indicated in Section 4.6. The densitometric analysis was performed using ImageJ image-processing software [64 ]. The densitometric values are expressed as a percentage of the maximum integrated densitometric value (the product of the area and mean grey value).
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6

Purification of RUVBL1-RUVBL2-ZNHIT2ΔC Complex

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Purified GST-ZNHIT2ΔC was incubated with the RUVBL1–RUVBL2 protein complex with a molar excess ratio 1:3 of ZNHIT2ΔC for 20 min at RT. The sample was then incubated with pre-equilibrated Glutathione Sepharose 4B resin (Merck) for 2 h at 4°C with agitation. Unbound protein fraction was subsequently removed by several washing steps (washing buffer was 50 mM Tris–HCl pH 8.0, 100 mM KCl, 1 mM DTT). RUVBL1–RUVBL2–ZNHIT2ΔC protein complex was eluted by incubation with the GST-3C protease for 30 min at 4°C that removed the GST tag that kept GST-ZNHIT2ΔC bound to the resin.
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7

GST-ZNHIT2ΔC Affinity Purification

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GST-ZNHIT2ΔC (bait) was incubated with Glutathione Sepharose 4B resin (Merck) for 2 h at 4°C with agitation. Binding/washing buffer was 50 mM Tris–HCl pH 8.0, 100 mM KCl, 1 mM DTT; and elution buffer was 50 mM Tris–HCl pH 8.0, 100 mM KCl, 1 mM DTT, 20 mM reduced l-glutathione.
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