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3 protocols using cd4 clone sk3

1

Multiparameter Flow Cytometry of PBMCs

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The phenotype of PBMCs cell subsets was evaluated by multiparameter flow cytometry. Cells were incubated in the dark for 20 min RT with the following panel of anti-human fluorescent labelled antibodies: CD3 (clone HIT3a, APC conjugated, BioLegend), CD4 (clone SK3, APC conjugated, eBiosciences), CD8 (clone SK1, APC conjugated, BD Biosciences), CD14 (clone 61D3, FITC conjugated, eBiosciences), CD25 (clone BC96, Alexa Fluor 488 conjugated, eBiosciences), CD69 (clone FN50, PE conjugated, eBiosciences), CD45 (clone L48, PerCyP conjugated, BD Biosciences), Foxp3 (clone PCH101, PE conjugatated, eBiosciences), IL-1β (clone CRM56, FITC conjugated, eBiosciences), IL-6 (clone MQ2-13A5, FITC conjugated, eBiosciences), IL-10 (clone JES3-9D7, Alexa Fluor 488 conjugated, eBiosciences), HLA-DR (clone L243, APC.Cy7 conjugated, BD Biosciences), CD33 (clone P67.6, PE conjugated, BD Biosciences), CD11b (clone D12, APC conjugated, BD Biosciences), CD14 (clone MɸP9, Brilliant Violet 421 conjugated, BD Biosciences) and Arginase-1 (ARG-1, FITC-conjugated, R&D Systems). Isotype controls were used for each experiment. After incubation, cells were again washed, resuspended in flow buffer and analyzed using FACSCalibur and FACSCanto II cytometers (BD, Biosciences). At least 5 × 104 events were collected, and the data was analyzed using Summit software (Summit Group Software).
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2

Neoantigen-reactive CD4+ T-cell Isolation

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Cryopreserved PBMC were thawed and cultured at 2×106 cells/mL in a 24-well plate with anti-CD40 at 500 ng/mL and each of the five neoantigen peptides as well as a control HIV NEF (RYPLTFGWCF) peptide at 1 µg/mL overnight at 37°C. After 16 hours, cells were stained for with LIVE/DEAD Fixable Violet Dead Cell Stain (Invitrogen), followed by lineage markers CD14 (clone M5E2, Biolegend), CD19 (clone HIB19, Biolegend), CD4 (clone SK3, eBioscience), CD8 (clone 3B5, Invitrogen) and activation-induced markers CD69 (clone L78, BD Biosciences), CD137 (clone 4-1BB, Biolegend) and CD154 (clone TRAP1, BD Bioscience). Single neoantigen-reactive CD4 cells were sorted into RNAlater (Thermo Fisher) based on coexpression of CD69, CD137 and CD154 on a BD FACSAria II (BD Biosciences).
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3

Flow Cytometry Analysis of T-Cell Markers

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After 24 h in culture, cells were washed in PBS/0.5% FCS/0.05% NaN3 (Sigma–Aldrich). Cells were incubated with antihuman mononuclear antibodies CD4 (clone SK3, phycoerythrin [PE]–Cyanine5.5 conjugated), CD25 (clone 2A3, PE conjugated), and CD69 (clone FN50, eFluor450 conjugated; all eBioscience) at RT for 15 min. PRBCs were lysed with BD FACS lysing solution for 10 min and washed with PBS/0.5% FCS/0.05% NaN3. Cells were analyzed on a BD FACS Canto II flow cytometer and analyzed using the FlowJo software (version 10; BD Biosciences).
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