The largest database of trusted experimental protocols

7 protocols using ab307164

1

Exosome Effects on Hippocampal Neurodegeneration

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemistry was conducted to assess neuronal damage in the hippocampus. To evaluate the potential of exosomes in attenuating neuronal apoptosis and neurodegeneration, TUNEL staining (ApopTag Fluorescein In Situ Apoptosis Detection Kit, S7110, Merck, Darmstadt, Germany) and Fluoro-Jade C staining (Biosensis, South Australia, Australia) were performed on day 3 following the manufacturer’s protocol [19 (link),20 (link),21 (link)]. Neuronal integrity was assessed using Nissl staining (0.1% Cresyl violet solution; Muto pure chemical, Tokyo, Japan) during the acute phase (day 3) and chronic phase (day 28). To evaluate the effect of exosomes on activated microglia/macrophages, Iba1 staining was performed (1:1500, 019-19741, Wako, Japan). Neuronal inflammation was assessed using IL-1β (1:500, ab283818; Abcam, Cambridge, UK), IL-6 (1:200, bs-0379R; Bioss Inc., Woburn, MA, USA), and TNF-α (1:1000, ab307164; Abcam, Cambridge, UK) staining for day 7 section. Five non-overlapping ROIs were designated in the hippocampal area. The number of positive signals, area, or luminescence was measured using an automated cell/area counter (BZ-X Analyzer, Keyence Co., Osaka, Japan).
+ Open protocol
+ Expand
2

Quantitative Histological Analysis of Osteoarthritis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following micro-CT, the limbs were placed in 4% paraformaldehyde solution for 2 days and then decalcified for 12 days in 20% ethylene diamine tetra acetic acid(EDTA) in PBS (PH 7.0), processed, and embedded in paraffin wax, and 5μm coronal sections were obtained following the OARSI [44 (link)]. Serial sections were harvested every 75μm to encompass all weight-bearing areas of the knee joint. The sections were stained with 0.1% Safranin O/0.02% fast green to detect proteoglycans and glycosaminoglycans. Immunohistochemistry staining for Collagen II (Col2a1) (1:100, bs-10589R; Bioss, Beijing, China), Aggrecan (Acan) (1:200, bs-11655R; Bioss), MMP3(1:50, Ab52915; Abcam, Cambridge, UK), MMP13 (1:200, Ab39012; Abcam), IL6 (1:100, ab290735; Abcam) and TNFα(1:1000, ab307164; Abcam) were conducted on paraffin sections following appropriate antigen retrieval methods. The sections were imaged via an Axio Scope Light Microscope (Zeiss). The tibial plateau quadrants of the knee joint were scored by two independent blinded observers according the mouse recommendations of OARSI [44 (link)]. OA severity is expressed by the mean maximum score.
+ Open protocol
+ Expand
3

Histological and Immunofluorescence Analysis of Brain Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
For hematoxylin and eosin (H&E) staining, coronal sections of brain tissues, 20 µm thick, were stained using H&E, with incubation of 2 min for hematoxylin and 1 min for eosin. Sections underwent dehydration and permeabilization before microscopic observation (BX63, Olympus, Japan) (Li et al. 2020b (link)).
For immunofluorescence assay, fixed cells or tissue sections were treated to allow penetration of primary antibodies targeting ZO-1 (ab307799, Abcam, UK), Occludin (ab216327, Abcam, UK), Claudin-5 (ab131259, Abcam, UK), and CD31 (Sc-376764, SANTA CRUZ, US), followed by incubation with Alexa Fluor-conjugated secondary antibodies and DAPI staining. Confocal microscopy facilitated the visualization of these markers (Li et al. 2019 (link)).
The immunohistochemistry protocol entailed the use of antibodies specific to NeuN (ab177487, Abcam), TNF-α (ab307164, Abcam), and IL-1β (ab283818, Abcam). Following secondary antibody application and SABC amplification, the DAB chromogen revealed the localization of target proteins, which was counterstained with hematoxylin. Observations were made under an upright microscope (BX63, Olympus, Japan) (Li et al. 2020b (link)).
+ Open protocol
+ Expand
4

Evaluating Cytokine Protein Levels in Tissue Sections

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunofluorescence staining was employed on paraffin-embedded sections to evaluate TNF-α, IL-6, and IL-1β protein levels. The sections were prepared by cutting them to a thickness of 5 μm, followed by dewaxing in xylene and dehydration in a series of ethanol concentrations (100, 95, 85, and 80%). Subsequently, the sections were subjected to antigen retrieval using EDTA solution in a hot water bath for 30 min. After cooling, the slices were immersed in phosphate-buffered saline PBS (pH 7.4) for three cycles of five min each. After drying, bovine serum albumin (BSA; G5001, Servicebio, China) was sealed for 30 min. Subsequently, the sections were subjected to incubation overnight with anti-TNF-α (1:500, ab307164, Abcam), anti-IL-6 (1:50, ab233706, Abcam) and anti-IL-1β (1:50, ab283818, Abcam) at a temperature of 4°C. Next, a secondary antibody (1:300, Gb21303, Servicebio) was added after the sections were washed and decolorized in PBS (PH 7.3). The covered sections were incubated in the dark at an ambient temperature for 50 min. DAPI (G1012, Servicebio) solution was added after decolorization in PBS (pH 7.4), and incubated for 10 min at room temperature in the dark. The slides were then rinsed with water for 10 min, and a self-quenching agent was added for 5 min. The slides were examined under a light microscope.
+ Open protocol
+ Expand
5

Immunohistochemical Analysis of Rat Pancreas

Check if the same lab product or an alternative is used in the 5 most similar protocols
The immunohistochemical analysis of rat pancreatic tissue specimens used an insulin primary antibody kit (ab181547, 1/250, Abcam Inc., Cambridge, UK), a glucagon primary antibody kit (ab92517, 1/200, Abcam Inc., Cambridge, UK), TNF-α primary antibody kit (ab307164, 1/200, Abcam Inc., Cambridge, UK), and the 8-hydroxy-2′-deoxyguanosine kit (8-OHdG, 1/200, ab62623, Cambridge, UK). In the IHC analysis, pancreatic tissue specimens were incubated with the primary and secondary antibodies (Goat Anti-Rabbit IgG H&L, HRP, ab97051, Abcam Inc., Cambridge, UK) for 1 h using a BOND-MAX ICH/ISH device (Leica Biosystems, Australia). Dilution rates of primary and secondary antibodies were applied, as shown in Table 2. Diaminobenzidine chromogen solution (DAB Substrate Kit, ab64238, Abcam, UK) was applied to the pancreatic tissue specimens incubated with the primary and secondary antibodies for visualization under the light microscope. The tissues were counterstained with Harris Hematoxylin (Merck KGaA, Darmstadt, Germany) and mounted with an appropriate mounting solution.
+ Open protocol
+ Expand
6

Immunohistochemical Analysis of Hepatic Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemistry (IHC) was used to evaluate changes in TNF-α, NF-κB p65, and PCNA in hepatic tissues as descried previously (Hsu, et al., 1981 (link)). Briefly, 5 μm sections were dewaxed, and retrieved using citrate buffer (pH 6.8). Following that, endogenous peroxidase enzyme was blocked thru hydrogen peroxide (0.3%) in the processed tissue slices. The tissues were then probed with anti-TNF-α (dilution 1:1000) (ab307164, Abcam, USA), anti-NF-κB p65 (dilution 1:200) (E-AB-22066; Elabscience Company, USA), and anti-PCNA (dilution 1:50) (ab92729; Abcam, USA). After an overnight incubation at 4 °C, the plates were rinsed by PBS. Then, incubated with the selected antibody for 30 min at 22–25 °C. Visualization of the slides was achieved using a DAB kit, and counterstaining was performed with Mayer's hematoxylin (Elnagar et al., 2021 ). The intensity score of immunohistochemically markers were determined with Image J software analysis (NIH, USA) following the previous research (Nishad et al., 2023 ).
+ Open protocol
+ Expand
7

Protein Analysis of Lung Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins were extracted from lung tissues and MRC-5 cells using RIPA buffer (Beyotime). The concentrations were determined with BCA Protein Assay Kit (Beyotime). Proteins were separated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto polyvinylidene fluoride (PVDF) membranes. Thereafter, membrane blocking was completed with 5% skim milk for 1 h and incubated with α-SMA (#19245, CST), collagen I (#91144, CST), fibronectin (ab268020, Abcam), vimentin (#5741, CST), phospho-mTOR (p-mTOR; #2971, CST), mTOR (ab32028, Abcam, Cambridge, UK), LC3 (#12741, CST), TNF-α (ab307164, Abcam), IL-1β (ab315084, Abcam), IL-6 (ab9324, Abcam), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (60004-1-Ig, Proteintech, Rosemont, IL, USA) at 4 ℃ overnight. After washing, the sample was incubated with HRP-conjugated immunoglobin G (IgG) antibody (#7074, CST) at room temperature for 1.5 h. The blots were detected using and enhanced chemiluminescence (ECL) system (#E411-04/05, Vazyme).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!