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32 protocols using methocel

1

Spheroid-Based 3D Invasion Assay

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For spheroid formation, a mixture of lung cancer cells (5 × 104 cells) labeled with red fluorescence and GFP-labeled fibroblasts (1 × 105 cells) in 5 mL complete medium containing 20% METHOCEL (Sigma-Aldrich, St. Louis, MS, USA) and 1% Matrigel (BD Biosciences, Franklin Lakes, NJ, USA) was suspended on the lids of 150-mm dishes and incubated at 37°C for 2 days. Subsequently, the spheroid mixture (consisting of spheroids in 0.5× PBS, 0.01 N NaOH, and 3 mg/mL collagen) was implanted at the center of each well in a 12-well plate. Once the gels were polymerized, the wells were filled with the cell culture medium. After 1–2 days, images of the invading cells were captured using phase-contrast and fluorescence microscopy, and the invasion ratio was calculated by dividing the total invaded area by the central spheroid area using the ImageJ software for measurement.
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2

In Vitro Wound Healing and Angiogenesis Assays

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EC migration was performed on confluent monolayers in gelatin-coated 96-well cell culture plates. A wound of approximately 300 µm wide was made using a guided 96-well pin tool (Peira, Turnhout, Belgium). Wells were washed to remove cell debris and the medium was added. Images were captured with a Leica DMI3000 microscope (Leica, Rijswijk, The Netherlands) with Universal Grab 6.3 software (DCILabs, Keerbergen, Belgium), at time points T = 0 h to T = 8 h61 (link). Where indicated, wound closure (μm2) was expressed as a percentage of control wells.
EC spheroids were created using the hanging drop technology72 (link). Briefly, 1000 HUVEC were resuspended in 25 μl aliquots containing medium supplemented with 20% methocel (Sigma-Aldrich), and drops were incubated on the inverted lid of a PBS-filled petri dish. Twenty-four hours later, the drops were gently harvested and embedded in type I bovine collagen gel (2 mg/ml, Advanced BioMatrix), at approximately 20 spheroids per well in 8-well microscope slides (Ibidi). After solidification, medium and compounds were added on top of the gel. Quantification of sprouting was performed using a semi-automatic ImageJ-based macro73 (link) on 5–25 spheroids per condition. Cells were treated as indicated.
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3

Mammosphere Formation Assay for Breast Cancer

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For MCF10a stable cells, single cells were plated in ultralow attachment 6-well plates (Corning) in triplicates at a density of 10,000 cells/ml and cultured with 1.5% Methocel (Sigma) in DMEM: F12 medium (serum free) supplemented with B27 (Invitrogen) in 1:50 dilution, 20 ng/ml EGF and bFGF and 1 μg/ml hydrocortisone, 5 μg/ml bovine insulin. Every 3 days, 500 μl fresh media was added. On day 11, all the Mammosphere were counted and their diameter was measured using an ocular at 4X magnification. DIC images were taken at 4X magnification on day 11. Average number of mammosphere; greater than 50 μm size from two independent experiments are plotted using graph pad prism.
Mammosphere from each stable cell line were collected on day 11 and total protein was extracted using modified RIPA buffer. Western analysis was performed for YAP, RUNX1 and RUNX3 and actin expression.
For Hs578T and BT549 cell lines, the cells were grown in +/− 1 μg/ml doxycycline for 24 hrs and then plated as single cells onto ultralow attachment 96 well plate (Corning) in triplicates at a density of 1000–2000 cells in the same media as above. Numbers of mammosphere that are larger than 50 μm size were counted on Day 11 from three independent experiments.
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4

HUVEC Spheroid Angiogenesis Assay

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150,000 Human Umbilical Vein Endothelial Cells (HUVECs)/plug (Lonza, Basel, Switzerland) were stained with Vybrant Dil (1:200 in 1 mL Basal Medium (EBM); Thermo Fischer #V-22885). After incubation (45 min at 37°C, 5 min at 4°C) cells were washed with EBM (Lonza, Basel, Switzerland), resuspended (25 mL EGM containing 20% methocel; Sigma-Aldrich, Taufkirchen, Germany) and cultured in hanging drops (25 µL/drop). Harvesting of spheroids and injection of matrigel containing spheroids into SCID-mice (Harlan Winkelmann, Borchen, Germany) were performed as described in 28 (link). At day 26 after injection, the matrigels were analyzed as described below.
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5

Chick Embryo Xenograft for Tumor Treatment Evaluation

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Fertilized chicken eggs were incubated in a hatching incubator (relative humidity 65%, 37 °C), as previously described63 (link). On embryo development day (EDD) 8, A2780 or A2780cisR cells were prepared in 25 μL hanging spheroids containing 106 cells in 20% Methocel (Sigma-Aldrich) and 80% serum free RPMI-1640 medium. The spheroids were then incubated for 3 h and transplanted on the surface of the CAM. Vascularized three-dimensional tumors were visible 3 days after tumor cell implantation and randomized on EDD 11, when treatment was initiated. Tumors were treated on EDD 11 and 12 (referred to as treatment day 1 and 2) by 20 μl intravenous injection into a main blood vessel of the CAM. Erlotinib and RAPTA-C were freshly prepared and pre-mixed in 0.9% NaCl. The injected doses (10–20 μg/kg for erlotinib and 21.6–216 μg/kg for RAPTA-C) were adjusted to the normalized embryo weight at EDD 11/12 (4.27 g). Control tumors were treated with vehicle (0.14% DMSO in 0.9% NaCl). Tumors were monitored daily for 8 days and tumor size was calculated with the formula: volume = [large diameter] x [perpendicular diameter] 2 × 0.52. At EDD 18: (i) the embryos were sacrificed and weighed and (ii) the tumors were resected, weighed and fixed in zinc-fixative for additional analysis.
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6

Spheroids Formation and Oxygen Measurement

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Spheroids formation was performed following Wang et al. [29 (link)]. In brief, cells were seeded in 35 mm diameter dishes high Bioinert (Ibidi, Germany) at 0.1 × 106 cells/dish density in complete medium supplemented with 25% of Methocel (Sigma-Aldrich) stock solution (0.5 g in 500 ml of complete medium). Spheroids size (µm) was determined by measuring feret’s diameter using standard ImageJ software tools (ImageJ, National Institutes of Health). Intracellular oxygen level was measured using BTP (bis(2-(20-benzothienyl)-pyridinato-N,C30) iridium (acetylacetonate) (Sigma-Aldrich), a fluorescent dye quenched by molecular oxygen [30 (link)]. Spheroids were stained with 5 µM BTP in complete medium for 4 h. After this time, spheroids were carefully washed with phenol-red free medium. Images of at least ten spheroids for condition were acquired using a Nikon C1si confocal microscope (Nikon). Fluorescence intensity was analyzed using standard ImageJ software tools.
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7

Artificial Seawater Preparation and Cell Treatments

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Artificial seawater (pH 8.2, osmolality 1300 mmol/L, specially weight 1.05, NaCl 26.518 g/L, MgSO4 3.305 g/L, MgCl2 2.447 g/L, CaCl2 1.141 g/L, KCl 0.725 g/L, NaHCO3 0.202 g/L, and NaBr 0.083 g/L) was prepared according to the main components of seawater in the East China Sea provided by the China Oceanic Administration [23 (link)]. Dimethyl sulfoxide (DMSO) and dihydroethidium (DHE) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Cell Counting Kit-8 (CCK-8) was purchased from Biosharp Life Sciences (Biosharp, China). DMF (Cat# HY-17363), ML385 (Cat# HY-100523) and Ferrostatin-1 (Fer-1, Cat# HY-100579) were obtained from Med Chem Express (MCE, USA). Primary antibodies for anti-GAPDH (Cat# ab181602) and anti-Nrf2 (Cat# ab62352) were obtained from Abcam (Abcam, USA).
DMF was suspended in 0.9% NaCl and 0.5% Methocel (Sigma) to a final concentration was 4 mg/ml. Fer-1 was dissolved in dimethyl sulphoxide and then diluted in saline to a final concentration of 0.5 mg/ml.
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8

Spheroid-Based Angiogenesis Assay

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HUVEC and BP were mixed 1:1 in Endopan 3 containing 20% Methocel (Sigma). Twenty-five microliters cell suspension drops were pipetted on non-adherent plastic plates37 (link). Subsequently, plates were turned upside-down to form the so-called hanging drops in which spheroids are contained. Plates were incubated for 24 h at 37 °C and spheroids were collected by washing the plates with 10% FCS/PBS. Spheroids were centrifuged at 200g for 5 min and resuspended in 20% FCS and 80% Methocel. The collagen mix was prepared on ice using Collagen type I (isolated from rat tail tendons), Medium 199 and NaOH (1 M) in an 8:1:1 ratio. Additionally, 1 × HEPES buffer was added to the mix to adjust the pH. The collagen solution was mixed with the spheroid solution in a 1:1 ratio and transferred to a 24-well plate. For polymerization, gels were incubated for 30 min at 37 °C and then stimulated with 50 ng ml−1 hVEGF (R&D) in basal EC medium. The assay was stopped after 24 h of incubation at 37 °C by adding 1 ml 10% PFA per well. Pictures of ten spheroids per gel were taken on an Olympus TH4–200 microscope and average sprout length was measured with Fiji.
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9

Nrf2-Deficient Mouse Model of Tauopathy

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Colonies of Nrf2-/- mice and Nrf2+/+ littermates were established from funders kindly provided by Prof. Masayuki Yamamoto (Tohoku University Graduate School of Medicine, Sendai, Japan) [14] (link). Each experimental group comprised 5–8 animals. Recombinant AAV vectors of hybrid serotype 1/2 express mutant hTAUP301L under control of the human synapsin 1 gene promoter and were used as described [15] (link). Surgical procedures and unilateral intracerebral injection of viral particles into the right hemisphere were performed as described [22] (link). In brief, 2 μL viral suspension containing 10E8 t.u. was injected at the stereotaxic coordinates −1.94 mm posterior, −1.4 mm lateral, and −1.8 mm ventral relative to bregma. DMF (100 mg/kg) (Sigma-Aldrich) was suspended in 0.8% methocel (Sigma-Aldrich) and given by oral gavage. We did not detect significant weight loss, hair loss or other gross alterations in the DMF-treated mice either in the 3-weeks administration every day.
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10

Disulfiram Treatment for Ocular Lesions

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For local treatment of ocular lesions, disulfiram (Tetraethylthiuram disulfide, Sigma-Aldrich, Munich, Germany) was dissolved to a concentration of 300 μM in 2% (w/v) methocel ([Hydroxypropyl-methylcellulose], Sigma-Aldrich, Munich, Germany) and administered to the diseased C57BL/6J mice (n=8) daily from Day 8 to Day 19 as eye drops. The control group (n=8) received methocel only. In addition, C57BL/6J mice (n=8/group) were treated systemically with p.o. 200 mg/kg disulfiram once daily or olive oil (ALDI, Essen, Germany) over a period of 12 days.
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