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24 protocols using ab3080

1

Immunostaining of GABAergic Neurons

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NPCs cultured on coverslips were fixed with 4% paraformaldehyde (Sigma) for 30 min and washed with phosphate-buffered saline (PBS). For GABA antibody reactivity, the cells were fixed with 4% paraformaldehyde, 0~0.5% glutaraldehyde, and 0.5% potassium dichromate in 0.1 M phosphate buffer at pH 6.5. After fixing, the cells were incubated with primary antibodies against GFP (rabbit anti-GFP antibody, 1:500, Cat. No. AB3080, Merck KGaA, Darmstadt, Germany), gamma-aminobutyric acid (mouse anti-GABA antibody, 1:1000, Cat. No. ab86186, Abcam), glutamic acid dehydrogenase 65/67 (rabbit anti-GAD65/67 antibody, 1:500, Cat. No. Ab1511, Chemicon International Inc.), and vesicular glutamate transporter 1 (mouse anti-vGluT1 antibody, 1:500, Cat. No. MAB5502, Chemicon International Inc.). Cells were subsequently incubated with FITC- or Alexa fluor-conjugated secondary antibodies (1:200 for each, Molecular Probes). Slides were counterstained with 4,6-di-amidine-2-phenylindole dihydrochloride (DAPI, 1 µg/ml, Cat. No. D9542, Sigma-Aldrich). At least five fields of view (objective magnification: ×200) from an average of five slides per experimental group were selected randomly and neuronal differentiation marker-positive cells were then counted. Stained slides were examined under a confocal laser scanning biological microscope (LSM 510, Carl Zeiss).
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2

Murine HOXD13 Antibody Generation

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Murine HOXD13 antibody was produced following the protocol previously used to generate the HOXA13 antibody (Knosp et al., 2004 (link)). The HOXD13 immunizing peptide, consisted of a 16-amino-acid region with two additional lysine residues added to the C terminus (VGLQQNALKSSPHASL+KK) to facilitate full-length coupling to the KLH carrier protein (Knosp et al., 2004 (link)). GFP immunoprecipitation was made using lysates from E11.5 Hoxa13GFP/GFP limbs with a protein immunoprecipitation kit # 26149 (Thermo Fisher/Pierce) and a GFP antibody (AB3080, EMD/Millipore).
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3

Tracking Transplanted Cells in Spinal Cord

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The pigs were euthanized 21 days after transplantation. Transcardiac perfusion with 0.9% NaCl solution followed by 4% paraformaldehyde was performed. The fixed spinal cord was excised and frozen. The cord was sectioned axially at 50 μm intervals and stained with Prussian Blue (PB) reagent for microscopic Iron and counter-stained with Eosin. Immunohistochemical staining for detection of grafted human cells using a primary mouse monoclonal anti-human nucleus (HuNu) antibody (MAB1281; EMD Millipore; 1/250) and detection of grafted pig cells using a primary mouse monoclonal anti-GFP antibody (AB3080; EMD Millipore; 1/250) was performed on every 6th section with cresyl violet background stain. Images were captured using a Nikon E400 microscope supplied with NIS-Elements imaging software (Nikon Instruments, Inc.). The current study was not designed to investigate the therapeutic efficacy or biological properties of transplanted cell grafts, which has been established in previous studies[29 (link)–31 (link)].
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4

Murine HOXD13 Antibody Generation

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Murine HOXD13 antibody was produced following the protocol previously used to generate the HOXA13 antibody (Knosp et al., 2004 (link)). The HOXD13 immunizing peptide, consisted of a 16-amino-acid region with two additional lysine residues added to the C terminus (VGLQQNALKSSPHASL+KK) to facilitate full-length coupling to the KLH carrier protein (Knosp et al., 2004 (link)). GFP immunoprecipitation was made using lysates from E11.5 Hoxa13GFP/GFP limbs with a protein immunoprecipitation kit # 26149 (Thermo Fisher/Pierce) and a GFP antibody (AB3080, EMD/Millipore).
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5

Immunolabeling Protocols for Neural Markers

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Primary antibodies: anti-cFos (1:500, goat polyclonal, Santa Cruz catalog #sc-52-G; 1:50, rabbit monoclonal, Cell Signaling, catalog # 2250); anti-TH (1:1000, rabbit polyclonal, Emd millipore, catalog #AB152; 1:1000 mouse monoclonal, catalog #MAB5280 or 1:1000, Chicken polyclonal, Aveslabs, cataglog#TYH); anti-mCherry (1:1000, ThermoFisher Scientific, rabbit polyclonal ,catalog#PA5-34974); anti-GFP (1:500, Chicken polyclonal, Aveslabs, catalog#GFP-1020 or 1:1000, rabbit polyclonal, Emd millipore, catalog#AB3080). Fluorophore-conjugated secondary antibodies were purchased from ThermoFisher Scientific. Antibodies were diluted in PBS with 10% NGS and PBST.
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6

Immunofluorescence Staining of GFP

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Primary antibody was rabbit anti-GFP primary antibody (1:2000; Chemicon, AB 3080) and secondary antibody was donkey anti-rabbit Alexa Fluor 594 (1:2000; Molecular Probes, A21207). In rats in the GFP group, slices were only stained with DAPI.
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7

Quantifying Proliferative Cells in Xenopus Spinal Cord

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For proliferation assays, the thymidine analogue bromodeoxyuridine
(BrdU) was added to the culture medium (0.1X Barth) to a final concentration of
400 μM for 16 hrs (Fig. 4) or 4 hrs
(Fig. S3). Double
labeling for Sox2 and BrdU was performed as described (Yoshino and Tochinai, 2004 (link)). Mouse monoclonal
anti-BrdU was used (1:50, Roche, 11170376001). In experiments with the thymidine
analogue chlorodeoxyuridine (CldU, MP Biomedicals, LLC, 105478), tadpoles were
incubated with 3.8 mM CldU in 0.1X Barth for 4 hrs after electroporation with
X.Tropicalis Sox3 promoter driving GFP (Sox3::GFP). Spinal
cords were dissected, rinsed, embedded in gelatin and cut into 30 μm
sagittal sections using a vibratome. For CldU labeling, spinal cord sections
were blocked in 10% goat serum in PBST for 1 hr, then incubated with
rabbit anti-GFP (1:500, Chemicon, AB3080) for 2 hr, rinsed in PBST, and treated
with 2N HCl for 1 hr at 37°C, rinsed in PBST and blocked again in
10% goat serum in PBST for 1 hr before incubating overnight at
4°C with rat anti-CldU (1:400, OBT0030G). The CldU signal was enhanced
with biotin tagged goat anti-Rat secondary antibody (1:500, Jackson
ImmunoResearch) followed by detection with streptavidin-Alexa Fluor 546 (1:500,
Invitrogen, S11225). The sections were mounted and imaged using confocal
microscopy.
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8

Western Blot Analysis of Protein Targets

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Western blotting analysis was performed as previously described21 (link). The primary antibodies were rabbit antibodies against GFP (1:500 dilution, AB3080; Chemicon), human β-actin (1:2,500, ab8227; Abcam), mouse antibodies against Flag M2 (1:500, F3165; Sigma), human CAF-1 p150 (1:1,000, ab24746; Abcam). The secondary antibodies were horseradish peroxidase-conjugated donkey anti-rabbit IgG (1:2,500, NA934; Amersham Biosciences) and sheep anti-mouse IgG (1:7,500, NA931; Amersham Biosciences). ECL Plus reagents were from Amersham Biosciences. Chemiluminescence was detected using an LAS1000UV mini imager and quantified using the Image Gauge software (Fuji Film).
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9

Immunofluorescent Labeling of Neurons

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Primary antibodies were mouse anti-NeuN primary antibody (1:1000; Chemicon, MAB377) and rabbit anti-GFP primary antibody (1:2000; Chemicon, AB3080). Secondary antibodies were donkey anti-mouse DyLight 649 (1:500; Jackson ImmunoResearch, 715-495-150) and donkey anti-rabbit Alexa Fluor 594 (1:500: Mol. Probes, A21207).
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10

Immunofluorescent Analysis of Transplanted Muscle

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The transplanted TA/EDL muscles were cut into 8 μm transverse sections using a cryostat. The sections were fixed with cooled acetone for 10 min and air-dried. They were then blocked with 5% goat serum in 1% BSA/PBS for 15 min, or M. O. M Mouse Ig Blocking reagent (VECTOR) for 1 hour followed by 5% goat serum in 1% BSA/PBS for 15 minutes. The sections were incubated with anti-GFP antibody (1:300, AB3080, Chemicon) and anti-laminin α2 antibody (1:200, ALX-804-190, Alexis) in 1% BSA/PBS, or anti-GFP antibody and anti-Dystrophin antibody (1:100, Clone: Dy8/6C5, Leica) or anti-GFP antibody and anti-Ki-67 antibody (1:200, Clone: B56, BD Pharmingen) in M.O.M. Diluent at 4°C overnight. The sections were then incubated with Alexa Fluor 488- or Alexa Fluor 568-labeled secondary antibodies (1:1000, Thermo Fisher Scientific) in 1% BSA/PBS or M.O.M. Diluent. For TUNEL assay, ApopTag Red In Situ Apoptosis Detection Kit (Chemicon) was used. After several washings, nuclei were stained with DAPI (VECTOR). Immunofluorescent images were evaluated under a fluorescence microscope (BZ-9000; Keyence), and GFP-positive fibers or cells, GFP/Dystrophin double-positive fibers, GFP/Ki-67 double-positive cells or GFP/TUNEL double-positive cells were counted.
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