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501 protocols using glial fibrillary acidic protein (gfap)

1

Immunohistochemical Analysis of Brain Tissue

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Animals were anesthetized with sodium pentobarbital, and perfused with 0.9% saline followed by ice-cold 4% paraformaldehyde. Brains were removed and post-fixed overnight in 4% paraformaldehyde at 4°C and then transferred to 30% sucrose in PBS at 4°C for 2 days. Sagittal sections 30 or 40 µm thick were cut on a microtome (Leica CM 1850). Sections were dried, washed three times in 0.01M PBS and with 0.3% Triton-100X in 0.1M PBS (40 min) or frozen methanol (10 min at -20°C), then blocked with 10% BSA for 1 hr at room temperature. Sections were incubated with primary antibodies as follows: VGluT2 (guinea-pig polyclonal, 1:2000, Millipore), NeuN (monoclonal mouse, 1:500; Millipore), GFAP (rabbit, 1:500, Chemicon), GFAP (monoclonal mouse, 1:500; Synaptic System), Iba1 (polyclonal rabbit, 1:200; Chemicon), IP3R2 (polyclonal rabbit, 1:200; Santa Cruz), P2Y1 (polyclonal rabbit, 1:200; Abcom) at 4°C for 12–24 hr. Secondary Alexa-conjugated antibodies were added at 1:1000 in 0.1 M PBS for 2 hr at room temperature. Images were captured using an Olympus FV-1200 inverted confocal microscope.
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2

Multiparametric Immunostaining and Western Blotting

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The primary antibodies used in immunostaining were as follows: RNF20 (21615-1-AP; Proteintech, Rosemont, IL, USA), NESTIN (MAB353; Millipore, Darmstadt, Germany), ACSBG1 (ab118154; Abcam, Cambridge, UK), GFAP (G6171; Sigma, St. Louis, MO, USA), GFAP (Z0334 Dako, Santa Clara, CA, USA), GFAP (60190-1-Ig; Proteintech), GLAST (BMP009; MBL, Beijing, China), Tenascin C (110-68136; NB, Littleton, CO, USA), Ki67 (ab137876; Abcam), FLAG (F1804; Sigma), STAT3 (#9139; Cell Signaling Technology, Beverly, MA, USA). The primary antibodies used in western blotting were as follows: RNF20 (21615-1-AP; Proteintech), GLAST (20785-1-AP; Proteintech), ACSBG1 (ab118154; Abcam), GFAP (G6171; Sigma), STAT3 (#9139; Cell Signaling Technology), phospho-STAT3 (#9145; Cell Signaling Technology), Ubiquityl-Histone H2B (Lys 120) (#5546; Cell Signaling Technology), H4K16ac (07-329; Millipore), H3K9me3 (07-442; Millipore), Trimethyl-Histone H3 (Lys 27) (07-449; Millipore), H2B (ab1790; Abcam), FLAG (F1804; Sigma), HA (M20003; Abmart, Shanghai, China), β-ACTIN (20536-1-AP; Proteintech). Alexa-conjugated secondary antibodies (Jackson ImmunoResearch, West Grove, PA, USA) were used for immunostaining. IR Dye (LI-COR Biosciences, Lincoln, Nebraska, USA) 800 CW donkey anti-rabbit and 680 CW donkey anti-mouse secondary antibodies were used in western blotting.
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3

Isolation and siRNA Transfection of Rat Spinal Cord Astrocytes

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Primary astrocytes from postnatal day 1 rat spinal cord were prepared as we previously described (Hu et al., 2017 (link)) and incubated at 37°C in a humidified atmosphere of 95% air and 5% CO2. When cells became confluent, the cultures were shaken at 150 rpm for 16 h for purification. Astrocyte purification was confirmed by glial fibrillary acidic protein (GFAP; Sigma-Aldrich, St. Louis, MO, United States) immunocytochemical staining, and astrocyte cultures were considered appropriate for use when they were 95% positive for GFAP. Purified astrocytes at passage 2 were used for small interfering RNA (siRNA) transfection at a final concentration of 200 nM, using a NEPA21 electrical transfection instrument (Ishino et al., 2018 (link)). The siRNAs were synthesized by Suzhou GenePharma. Their sequences are listed in Table 1.
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4

Immunofluorescence Labeling of Hippocampal Astrocytes

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The brain was fixed with paraformaldehyde and kept in 30% sucrose for 48 hours. Hippocampal coronal sections (30 μm) were cut in the microtome and the tissues collected were kept in 0.1 M PBS. The sections were incubated with 2% normal donkey serum for 2 hours. For immunofluorescence reactions, the sections were incubated overnight with primary antibody (glial fibrillary acidic protein (GFAP), Sigma-Aldrich, St. Louis, MO, USA) and 4',6-diamidino-2-phenylindole; DAPI), followed by 2-hours incubation with secondary antibody (Alexa fluor 488 donkey anti-rabbit for GFAP). Six slices were placed in each slide and mounted with a coverslip. The sections were examined by fluorescence microscopy (Nikon Eclipse 80i with DXM 1200C digital camera; Nikon, Tokyo, Japan).
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5

Immunohistochemical Analysis of OECs

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Primary antibodies were utilized for detection of protein S-100␤ (calcium-binding protein) (Sigma), glial fibrillary acidic protein (GFAP) (Sigma) and p75 NTR (neurotrophin receptor) (Sigma), and cells were incubated for 1 h at 37 • C. The primary antibodies used were: mouse monoclonal 1:75 in 0.1 M PBS for detecting p75 NTR IgG1 (Sigma); mouse monoclonal specific IgG to S-100␤ 1:500 in 0.1 M PBS (Sigma and Dako, respectively); and rabbit polyclonal IgG to detect GFAP 1:1 in 0.1 M PBS (Sigma). Finally, specific secondary antibodies were used for all immunosections. The number of OECs expressing antibodies S-100␤, GFAP and p75 NTR in light microscopy were counted, 1000 and 500 cells per field for a total of 360 samples, by using a Nikon Eclipse TS100 and Olympus CX 21.
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6

Immunofluorescence Staining of Spinal Cord Tissue

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Immunofluorescence staining and double immunostaining were performed as
previously described.28 (link) Briefly, four rats from each group were selected, deeply anesthetized,
and exsanguinated. Then, the lumbar enlargements were removed, soaked in 4%
phosphate-buffered paraformaldehyde for 4 to 6 h at 4 °C, and subsequently
dehydrated in a 10% to 30% gradient of sucrose in sterile water for five to
seven days at 4 °C. Next, the lumbar enlargement of the spinal cord tissues was
frozen in optimal cutting temperature (OCT) compound (Sakura, America) in a
cryostat at −25°C and then sliced at a thickness of 20 µm. The sections were
first blocked with 4% normal donkey serum, 0.03% Triton X-100, and PBS for 1 h
at room temperature. The sections were then incubated overnight at 4 °C with the
following primary antibodies: p-eIF2α (1:200, rabbit; Affinity), cleaved
caspase-3 (1:150, rabbit, Affinity), glial fibrillary acidic protein (1:1000,
mouse; Sigma), IBA-1 (1:250, mouse; Abcam), and NeuN (Mouse,1:1000, Abcam). The
sections were washed with PBST and incubated for 2 h with fluorescein
isothiocyanate- or Cy3-conjugated secondary antibodies (1:500, Abcam) at room
temperature. Finally, the stained sections were surveyed with an Olympus
fluorescence microscope, and images were acquired with a CCD Spot camera.
Finally, the images were analyzed using Image Pro-Plus 6.0 (Image Pro-Plus
Kodak, USA).
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7

Antibody Characterization for Retinal Analysis

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Antibodies used that were custom generated in our laboratory included RPGR-s1 (rabbit), RPGR-570 (rabbit), and c100 (rabbit), S-Opsin (chicken), and Rootletin (chicken). Other antibodies included Rhodopsin 1D4 (mouse; Gift from Bob Molday), M-Opsin (rabbit; Millipore AB5405), GT335 (mouse; Adipogen AG-20B-0020), AHI1 (mouse; Abcam ab93386), and Glial Fibrillary Acidic Protein (mouse; Sigma G3893).
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8

Glioma Tumor Induction in Rats

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A total of 60 male SD rats (body weight 210–250 g; mean 230 g) were purchased.
The C6 glioma cells were purchased from the Chinese Academy of Sciences, Shanghai Institute of Cell Biology (Shanghai, China). Factor (F) VIII R, glial fibrillary acidic protein (GFAP), and S-100 protein antibody I were bought from Sigma Company.
The following instruments and systems were also used: Immunohistochemical detection kit (Boster company. China); rat stereotactic apparatus (Jiangwan II); 4.7 T BIOSPEC30 type magnetic resonance tomography (Wuhan Institute of Physics and Mathematics of the Chinese Academy of Sciences); and DIOMED60 type semiconductor laser diode (DIOMED company). The advanced fourth-generation aluminum gallium arsenic diode laser had a wavelength range of 790–830 nm and adjustable power output of 0.5–60 W. ThermaCAM S65 type infrared thermal image thermometer and thermocouple thermometer, both manufactured by Raytek company, were used for temperature measurement.
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9

Immunocytochemistry of Brain Sections

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The immunocytochemistry is performed as described previously. Brain sections were first pretreated in 0.5% Triton X-100 in PBS for 1 h, followed by incubation in 10% normal donkey serum and 0.1% Triton X-100 in PBS for 1 h. Primary antibodies were incubated with brain slices overnight at 4 °C. After additional washing in PBS, the samples were incubated with appropriate secondary antibodies conjugated to Alexa Fluor 488, Alexa Fluor Cy3 for 1 h at room temperature, and then incubated with DAPI (Thermo Fisher, D1306) for 10 min, followed by washing in PBS. The primary antibodies were GFAP (EMD Millipore, 3,380,386, Mouse), MAP2 (Abcam, ab32454, Rabbit), Iba1 (Abcam, ab178847, Rabbit), DCX (Cell Signaling Technology, 91,954, Rabbit) and Active caspase 3 (Bioss, bsm-33199 M, Mouse). The secondary antibodies were Alexa 488 (Jackson ImmunoResearch, 715-546-150) and Cy3 (Jackson ImmunoResearch, 711-165-152).
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10

Multimarker Immunofluorescence Imaging

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A double immunofluorescene procedure using NLRP3 (1:100, Santa Cruz Biotechnology; Santa Cruz, CA), CD31 (BD Biosciences; San Diego, CA), MAP2 (1:100, Merck/Millipore; Jaffrey, NH), GFAP (1:100, Merck/Millipore), and Iba‐1 (1:100, Abcam; Cambridge, MA) was performed as described previously. Photographs were taken with a confocal microscope (Leica; Solms, Germany) for further analysis.
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