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35 protocols using uplanapo

1

Fluorescence and Confocal Microscopy Imaging

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Fluorescence images on sections or flat-mounted brainstems were captured with a charge-coupled device camera (Axiocam, Zeiss) attached to an upright microscope (BX-60, Olympus) at 1296 × 1030 pixel resolution. Objective lens used were 2× Plan Apo with numerical aperture (NA) 0.08 (Olympus), 4× UPlan Apo with NA 0.16 (Olympus), 10× UPlan Apo with NA 0.40 (Olympus), and 20× UPlan Apo with NA 0.70 (Olympus). All bright-field images on ISH sections and some fluorescence images were captured with an All-in-one Fluorescence Microscope (BZ-X700, Keyence) with an objective lens of CFI 10× Plan Apo Lamda, NA 0.45 (Nikon), or CFI 20× Plan Apo Lamda, NA 0.75 (Nikon). Double-fluorescence ISH, triple-fluorescence IHC with HA, EGFP and Robo3, and Lhx1 IHC images were captured with a confocal laser scanning microscope (Olympus FV1200). Objective lens used were 20× UPlan SApo NA 0.75 and 40× UPlan SApo Sil NA 1.25. Adobe Photoshop CC and Adobe Illustrator CS3 were used to assemble figures.
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2

Bright-field Imaging of DAB-Ni2+ Tissue Sections

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Bright-field images of tissue sections were obtained with a light microscope (BX-51, Olympus) equipped with dry objectives (10× UPlanApo, NA = 0.40, WD = 3.1 mm, Olympus; 40× UPlanApo, NA = 0.85, WD = 0.2 mm, Olympus) and a CCD camera (DP72 or DP74, Olympus). DAB-Ni2+-labeled sections were mounted onto glass slides (Superfrost micro slide glass APS-coated, Matsunami Glass) and coverslipped with 50% glycerol, 2.5% 1,4-diazabicyclo[2.2.2]octane (DABCO) (049-25712, Wako Pure Chemical Industries), and 0.02% sodium azide (31233-55, Nacalai Tesque) in PBS.
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3

In Vivo Fluorescence Imaging of GCaMP6s

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A high-brightness blue light-emitting diode (LED) with a central wavelength of 460 nm was used for GCaMP6s excitation. After passing a collection lens and a band-pass filter (460 nm/60 nm, Chroma, US), the fluorescence was directed into a 4× dry objective (UPlanApo, 0.16 NA, 13 mm W.D., Olympus, Japan) via a dichroic mirror (T470lpxr, Chroma). The GCaMP6s fluorescence image was then captured by a 16-bit scientific complementary metal-oxide-semiconductor (sCMOS) camera (Panda 4.2, PCO, German) via a relay lens consisting of the objective and a tube lens, yielding a ∼3.4 × 3.4 mm2 field-of-view with up to 2048 × 2048 pixels/frame. The excitation power projected onto the cortex was adjusted to approximately 10 mW and images were acquired at 30 frames/second (fps) with 2 × 2 spatial binning.
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4

Microscopic Observation of Microbial Colonies

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Wild type (WT) and various mutants were observed with an inverted microscope (Willowert Wetzlar 21-D6330, X4 objective), and photographed (X10 objective) with a BX50 Olympus microscope equipped with a differential interference contrast (DIC) device and a digital camera (Olympus F-view II). When necessary, a small piece of agar supporting several colonies was covered with a glass cover slip, cut and placed on a microscope slide to observe the presence of cysts or rods with the 100 X oil immersion objective (UPlanApo, Olympus)4 (link).
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5

Immunodetection of Meiotic Proteins

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Spermatocyte squashes were obtained as described previously (Page et al. 1998 (link), Viera et al. 2002 (link)). After fixation, squashed spermatocytes were rinsed three times in PBS for 5 min, and incubated with mouse anti-SYCP3 (1:100), ACA/CREST serum (1:30) and guinea pig anti-SKAP (1:100) antibodies diluted in PBS at 4 °C overnight. Nuclei spreads were prepared according to the drying-down technique as described in Peters et al. (1997) (link) and immunostained as described in Grey et al. (2009) (link). For studies in HeLa cells, cells were grown on coverslips and transfected with GFP-SKAP overnight. For immunofluorescence, HeLa cells were washed with PBS, fixed in methanol for 10 min and permeabilized in PBS/0.05% Triton X-100/5% fetal veal serum for 1 h. Cells were incubated with primary antibodies (rabbit anti-GFP, 1:1000 and mouse anti-tubulin clone DM1a, 1:500) in blocking solution at room temperature (RT) for 1 h. After washes in PBS containing 0.1% Tween-20 (PBS-T), cells were incubated with secondary antibodies for 1 h at RT and then stained with DAPI (1:2000). Images were recorded with a Zeiss Axioimager Z1 microscope equipped with a Coolsnap HQ2 camera at 1×1 binning with a 100×, 1.3 NA Olympus U-PlanApo objective. Images were imported into Image J for further processing.
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6

Visualizing B2R-GFP Receptor Internalization and Recycling

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Human Embryonic Kidney 293 cells stably expressing B2R-GFP at the level of their plasma membrane exhibit BK-induced endosomal internalization of the fluorescent receptor, maximal 30 min after stimulation but with gradual recycling to the cell surface in 1–3 h (Bachvarov et al., 2001 (link); Charest-Morin et al., 2013b (link)). A microscopic assay of extended BK analogs was based on this system and on the fact that the culture medium containing 10% heat-inactivated fetal bovine serum contains the active soluble form of ACE that remains the main BK inactivation pathway in the system (Bachvarov et al., 2001 (link)). Arg-CP(s) sensitive to Plummer’s inhibitor are also found in human plasma and inflammatory synovial fluid that contains serum proteins (Chercuitte et al., 1987 (link)), suggesting that serum-containing culture medium may contain this enzymatic activity. HEK 293 cells stably expressing B2R-GFP were observed in epifluorescence microscopy at a 1000× magnification and photographed using an Olympus BX51 microscope coupled to a CoolSnap HQ digital camera (filters for GFP and fluorescein: excitation 460–500 nm, emission 510–560 nm, objective lens 100× oil UPlanApo, Olympus). The experiments were based on BK or BK analog stimulation of different durations to monitor either the endocytosis of B2R-GFP (30 min) or their recycling (3 h), based on previous time course findings.
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7

Quantification of Cardiac Fibrosis

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The frozen cardiac tissue of ACT patients, as well as healthy controls, was embedded, sliced, and stained with Masson’s trichrome staining in cooperation with the Department of Pathology of the University Medical Center Göttingen. The area of fibrosis was quantified in cooperation with the Technology Platform Clinical Optical Microscopy. The slides were first scanned for virtual microscopy using a 20 × objective (UPlanApo) with the dotSlide SL slide scanner (Olympus) and a peltier-cooled XC10 camera. Fibrotic areas were then calculated by a scientist blinded to analyzed myocardium, using the CellSens Dimensions software (Olympus).
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8

Morphological Characterization of IM Microparticles

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The morphologies of the IM bulk powder and the IM microparticles without PVA were characterized using an optical microscope (OLYMPUS BX51, Olympus Corporation, Tokyo, Japan) equipped with a microscope digital camera (Visualix V500FL, Visualix K.K., Hyogo, Japan). A 40× magnification objective lens (UplanApo, Olympus Corporation) was used. The morphologies of the IM microparticles (IM-NK(50), IM-KP(50), IM-NK(Dry), IM-KP(Dry)) were characterized using a scanning electron microscope (SEM). The JSM-6060LA scanning electron microscope (JEOL Ltd., Tokyo, Japan) was used to obtain SEM images.
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9

Multicolor TIRF Microscopy Imaging

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All TIRF imaging data was collected using an inverted microscope (IX83; Olympus) equipped with a 60×/1.5 NA oil-immersion TIRF (UPlanApo; Olympus) and included a correction collar, with an additional 1.6X magnification applied (total 100X magnification). Fluorescent excitation used a 640 nm/140 mW diode laser (Olympus Soft Imaging Solution; 00026121) and a 488 nm/100mW diode laser (Olympus Soft Imaging Solution; 00026125). Images were captured using a Hamamatsu ORCA-Fusion sCMOS camera (C14440) and Hamamatsu W-View Gemini image splitter (A12801-01). For simultaneous 2-color, live cell acquisition a filter set of Chroma single-bandpass 705/100 nm (394148) and a Semrock 520/28 nm (FF02-520/28) were used in combination with a Semrock single-edge standard epi-fluorescence dichroic beamsplitter (FF555-Di03). Images were acquired at 900 ms exposure time. Samples were held at 36°C using a Bioptechs objective heater controller (150803).
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10

Fluorescence Imaging of Receptor Constructs

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Other recipient HEK 293a cells were grown and transiently transfected as described above with a vector coding for the human B1R C-terminally tagged with FLAG (hB1R-FLAG) [14 (link)], a pharmacologically intact B1R construction, or with human B2R or ACE fused at their C-terminus to the mCherry FP. Stimulations for microscopic or cytofluorometric experiments were based on the lysates for the GFP/mCherry-based ligand constructs. Receptor- or ACE- expressing HEK 293a cells were generally treated for 30 min with stimulants (incubation carried out at 37°C in humidified atmosphere containing 5% CO2), rinsed 3 times with phosphate buffered saline, observed in microscopy for epifluorescence and photographed using an Olympus BX51 microscope coupled to a CoolSnap HQ digital camera (filters for GFP: excitation 460–500 nm, emission 510–560 nm; for mCherry FP: excitation 525–555 nm, emission 600–660). The objective lens was the 100× oil UPlanApo (Olympus).
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