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13 protocols using a044 1 1

1

Evaluating Oxidative Stress Markers in Lung Tissues

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The lung tissues were homogenized with the tissue lysis buffer (Beyotime). The tissue homogenate was lysed on ice for 15 min and treated with centrifugation (4000 g, 4 °C, 15 min). According to the protocol, MPO activity in the supernatant was determined using a MPO assay kit (A044-1-1, Nanjing Jiancheng Biological Engineering Research Institute Co., Ltd, Nanjing, China). Then, cells were lysed primarily. Cell lysate was centrifuged at 600 g and 4 °C for 10 min to collect the supernatant. According to the protocols, MDA content and SOD activity were measured using a MDA commercially available kit (A003-1-2, Nanjing Jiancheng Biological Engineering Research Institute Co., Ltd) and a SOD assay kit (A001-3-2, Nanjing Jiancheng Biological Engineering Research Institute Co., Ltd).
Following the manufacturer's instructions, ROS level was determined using a ROS assay kit (S0033S, Beyotime). For in vivo analysis, lung homogenate was incubated with 2′,7′-dichlorodihydrofluorescein diacetate (DCFH-DA) at 37 °C for 30 min. The change in fluorescence intensity at 500/530 nm was analyzed using a fluorescence microplate (Bio-Rad). For in vitro analysis, cells were incubated with DCFH-DA at 37 °C for 20 min and washed with serum-free medium. The fluorescence intensity at 488/525 nm was determined and results were shown as percentages.
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2

Quantifying Neutrophil Infiltration via MPO

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As the specific marker of neutrophils, MPO was generally detected to reflect the degree of neutrophil infiltration. In order to appraise the MPO levels, 10% tissue homogenates were prepared and MPO activity was calculated according to the manufacturer's instruction (A044-1-1, Nanjing Jiancheng, China).
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3

Anti-oxidative and Anti-inflammatory Assays

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Assay kits for SOD, MDA, CAT, GPx, and MPO were obtained from Jiancheng Bioengineering Institute (A001-3-2, A003-1-2, A007-1-1, H545-1-1, and A044-1-1) (Nanjing, China). ELISA assays for PGI, PGII, iNOS, NO, PGE2, TNF-α, IL-1β, and IL-6 were obtained from MEIMIAN (MM-70280R1, MM-70274R1, MM-0889R1, MM-70810R2, MM-0068R1, MM-0180R1, MM-0047R2, and MM-0190R1). Rabbit anti-NF-κBp65 conjugated antibody (AF5006), rabbit anti-p-NF-κBp65 conjugated antibody (AF2006), and mouse anti-β-actin antibody (T0022) were obtained from Affinity. Lipopolysaccharides (LPS) (batch number HY-D1056) were obtained from MedChemExpress.
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Quantifying Neutrophil Infiltration via MPO

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As the specific marker of neutrophils, MPO was generally detected to reflect the degree of neutrophil infiltration. In order to appraise the MPO levels, 10% tissue homogenates were prepared and MPO activity was calculated according to the manufacturer's instruction (A044-1-1, Nanjing Jiancheng, China).
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5

Lung Tissue Oxidative Stress Assay

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Lung tissue samples were rinsed with PBS and then minced into pieces. The tissues were fully homogenized on ice with PBS. Then, the homogenates were centrifuged; the supernatant was obtained to measure the levels of detection of malondialdehyde (MDA), glutathione (GSH), superoxide dismutase (SOD), and myeloperoxidase (MPO) by commercial kits (A003-1; A006-2-1; A001-1; A044-1-1; Nanjing Jiancheng Bioengineering Institute, China).
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6

Cytokine and Oxidative Stress Evaluation

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Cytokines was correlated tightly with the occurrence of the infection, interleukin-6 (IL-6), tumor necrosis factor-α (TNF-α) and interleukin-1 (IL-1), while myeloperoxidase (MPO), malondialdehyde (MDA), glutathione (GSH) and superoxide dismutase (SOD) were correlated with oxidative stress reaction, which was often occurred in UC. So here we measured this cytokinesis to evaluate the efficacy of the treatment. IL-6 (SEA079Ra; Cloud-Clone Corp) and TNF-α (SEA133Ra; Cloud-Clone Corp) were quantified using commercially available ELISA kits. Standard curves are shown in Supplementary Figure S1D,E. MPO (A044-1-1; Nanjing Jiancheng Bioengineering Institute), GSH (A006-1-1; Nanjing Jiancheng Bioengineering Institute), MDA (A003-1-2; Nanjing Jiancheng Bioengineering Institute) and T-SOD (A001-1-2; Nanjing Jiancheng Bioengineering Institute levels in sera were determined by ELISA assay kits according to the manufacturer’s instructions.
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7

Measuring Oxidative Stress in Lung Cells

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After the mice were sacrificed, the BALF was harvested and lysed by Ammonium-Chloride-Potassium Lysis buffer (Beyotime Institute of Biotechnology). To detect ROS generation, the sedimented cells were resuspended in PBS. Briefly, the cells were incubated with 50 µM of DCFH-DA for 30 min at 37˚C in darkness. DCF fluorescence intensities were measured by flow cytometry. At the end of the treatment, the cells were incubated with 10 µM dichloro-dihydrofluorescein diacetate (DCFH-DA; Beyotime Institute of Biotechnology) for 1 h at 37˚C in the dark. ROS generation in the cells was measured immediately using a fluorescence microscope (magnification, x200; Nikon Corporation). Myeloperoxidase (MPO) activity, malondialdehyde (MDA) content, superoxide dismutase (SOD) activity, and glutathione (GSH) content were also measured. The lung homogenate was dissolved in extraction buffer to detect the levels of MPO, MDA, SOD and GSH using commercially available assay kits (cat. nos. A044-1-1, A003-1-2, A001-3-2 and A005-1-2, respectively; Nanjing Jiancheng Bioengineering Institute), according to the manufacturer's instructions.
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8

Biochemical Evaluation of Pancreatitis and Liver Injury

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Fresh pancreatic and liver tissues and blood samples were collected for biochemical analysis. The levels of serum amylase and lipase were measured by assay kit (C016-1-1, A054-1-1, Nanjing Jiancheng Bioengineering Institute, Nanjing, China) to evaluate the degree of pancreatitis. The serum levels of alanine aminotransferase (ALT) and aspartate aminotransferase (AST) were measured with commercial kit (C009-2-1, C010-2-1, Nanjing Jiancheng Bioengineering Institute, Nanjing, China) to evaluate the degree of liver injury and function. The contents of malondialdehyde (MDA) and superoxide dismutase (SOD) in pancreas and liver homogenate were determined with commercial kit (A003-1-2, A001-3-2, Nanjing Jiancheng Bioengineering Institute, Nanjing, China). The contents of myeloperoxidase (MPO) were measured with commercial kit (A044-1-1, Nanjing Jiancheng Bioengineering Institute, Nanjing, China). All measurements were conducted according to the manufacturer’s instructions of the assay kit.
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9

Quantifying Cellular Oxidative Stress

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Reactive oxygen species (ROS) were detected by a dichlorodihydrofluorescein diacetate (DCFH-DA) probe with a BioTek Gen 5 instrument (Ex 488 nm, Em 525 nm) and a fluorescence microscope (Leica DMI4000B, Germany). Myeloperoxidase (MPO) activity was measured using a commercial kit (A044-1-1, Jiancheng Biotech) according to the manufacturer’s instructions. The total antioxidant capacity in lung tissues/cell homogenate was measured using a commercial kit (S0119, Beyotime). Superoxide dismutase (SOD) activity was measured using a kit (S0109, Beyotime) based on the nitroblue tetrazolium reduction reaction.
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10

Inflammatory Cytokine and MPO Quantification

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The interleukin (IL)-1β (No.JM-01454R1, Jingmei Biotechnology), IL-6 (No.JM-01597R1, Jingmei Biotechnology), tumor necrosis factor-α (TNFα) (No.JM-01587R1, Jingmei Biotechnology) and IL-10 (No.JM-01602R1, Jingmei Biotechnology) kits were used to measure the levels of IL-1β, IL-6, TNFα and IL-10 in serum and BALF. After the lower part of the lung graft was homogenized, myeloperoxidase (MPO) activity was determined using a commercially available assay kit (No. A044-1-1, Nanjing Jiancheng Bioengineering Institute).
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