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2 protocols using ab17993

1

Immunohistochemical Analysis of DNA Repair Proteins

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MLH1, MPG, FEN1, POLβ and XRCC1 expression in primary tumours was examined from formalin-fixed paraffin-embedded samples. Tissues were sectioned at 4-μm and mounted on silanized slides, which were stored at 4°C. After deparaffinization and rehydration, the sections were quenched with 3% H2O2 in methanol to block endogenous peroxidase. Bovine serum albumin at 5% (BSA) was then applied to prevent non-specific binding. The sections were incubated with anti-MPG (dilution 1:100, Abcam, mouse, EPR10959(B)), anti-Polβ (dilution 1:500, Abcam, rabbit, ab26343), anti-FEN1 (dilution 1:800, Abcam, rabbit, ab17993), anti-XRCC1 (dilution 1:50, Abcam, mouse, ab1838), anti-MLH1 (dilution 1:100, Abcam, ab92312) and PCNA (dilution: 1:400, mouse, #2586) antibodies, and then incubated with appropriate secondary antibodies (DAKO). Diaminobenzidine (DAB) was used as chromogen and the sections were counterstained with haematoxylin. Omission of the primary antibody was used as a negative control. Protein expression was evaluated using Quick Score (QS) (by assessing both staining intensity and the percentage of the stained area with a given intensity) and dichotomized in low (score between 0 and 4) and high expression (score between 5 and 12) (Supplementary Material and Methods). Only stained nuclei of malignant cells were assessed.
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2

Protein Expression Analysis in Brain Regions

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Proteins extracts (40 μg) from striatum, motor cortex and cerebellum were separated on 4–12%-SDS polyacrylamide gels (Novex Pre-Cast gels, Invitrogene) and transferred to nitrocellulose membranes with a TransBlot cell apparatus (Bio-Rad). α-POL β (ab26343; 1:500, Abcam, Cambridge, UK), α-FEN1 (Abcam, Ab17993; 1:500), α-OGG1, (Abcam, Ab135940; 1:500), α-p53R2, (Abcam, Ab8105; 1:1000), APE1/Ref1 (sc5572; 1:100, Santa Cruz Biotechnology, USA), α-MUTYH (Abcam, Ab55551; 1:500) primary antibodies were used with α-β-Tubulin (Sigma, T5293; 1:2000) and α-LAMIN B1 (Abcam, ab16048; 1:10 000). Immunoreactions were detected with appropriate α-rabbit or α- mouse peroxidase-conjugated secondary antibodies (Jackson ImmunoResearch Laboratories, 1:10 000) and the ECL Western blotting detection Kit (Advansta). Signals were captured with ChemiDoc XRS system (Biorad) and quantified with Image Lab software.
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