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3 protocols using anti kif5b

1

Endosomal Trafficking Lipid Composition

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DOPE (1,2-dioleoyl-sn-glycero-3-phosphoethanolamine), bovine liver phosphatidylinositol (PI), brain PS, and egg PA were purchased from Avanti Polar Lipids. PI 3-phosphate diC16 [PI(3)P], PI 4-phosphate diC16 [PI(4)P], and PI 5-phosphate diC16 [PI(5)P] were obtained from Echelon Biosciences. Folch fraction I and egg PC were purchased from Sigma-Aldrich. YM201636 PIKfyve inhibitor was purchased from Cayman Chemical. A cell fractionation kit was obtained from Cell Signaling Technology. Nontargeting control siRNA was obtained from Horizon Discovery, and human KLC1/2 siRNAs were from Santa Cruz Biotechnology. The following primary antibodies were used: horseradish peroxidase (HRP)–conjugated anti-His6 (71841, Novagen), anti-GFP for immunoblotting (3E1, Roche), anti-actin (AC-74, Sigma-Aldrich), anti–β-tubulin (AA2, Sigma-Aldrich), anti–histone H3 (Abcam), anti-giantin (PRB-114C, Covance), anti-HA (HA-7, Sigma-Aldrich), anti-KLC1 ([EPR12441(B)], Abcam), anti-KLC2 (Abcam), anti-KIF5B (Abcam), anti-LAMP1 (lysosome-associated membrane protein 1) (D2D11, Cell Signaling Technology), anti-Rab7 (D95F2, Cell Signaling Technology), and anti-Rab6 (D37C7, Cell Signaling Technology). Alexa 568– and Alexa 633–conjugated anti-mouse or anti-rabbit secondary antibodies were from Thermo Fisher Scientific.
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2

Antibodies for Cellular Protein Analysis

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Antibodies used were the following: anti-EEA1 (#3288; Cell Signaling Technology, Danvers, MA), anti-Rab5 (#3547; Cell Signaling Technology), anti-p38MAPK (sc-7972; Santa Cruz Biotechnology, Dallas, TX), anti-pp38MAPK (#4511; Cell Signaling Technology), anti-MHC (MF-20; Developmental Studies Hybridoma Bank, Iowa City, IA), anti-myogenin (F5D; Developmental Studies Hybridoma Bank), anti-Bnip-2 (H-126; Santa Cruz Biotechnology), anti-KIF5B (ab42492; Abcam, Cambridge, MA), anti-JLP (ab12331; Abcam), anti-CDO (R&D systems), anti-FLAG epitope (F7425; Sigma-Aldrich, St. Louis, MO), anti-HA epitope (715500; Invitrogen), and anti-tubulin (M1301-3; HuaAn Biotechnology, Hangzhou, China).
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3

Immunofluorescence Analysis of Wing Disc

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Third instar wing discs were staged and fixed in 4% paraformaldehyde. Immuno-fluorescence was performed as described(Das et al., 2013 (link)). Antibodies used: anti-pRET[Y905], anti-pJnk, anti-pAkt, anti-SOX2, anti-slug, anti-NCadherin, anti-pEGFR[Y845], anti-pEGFR[Y1068], anti-pFGFR[Y653/654], anti-Rab5, anti-Rab7, anti-Rab9(Cell Signaling), anti-pSRC[Y418] (Invitrogen), anti-dpERK (SIGMA), plus anti-Actin,, anti-E-cadherin, anti-α-Catenin, anti-Rho1, anti-Syntaxin, anti-β-tubulin (Developmental Studies Hybridoma Bank), anti-Actin, anti-GAPDH antibodies (Santa Cruz Biotechnology), anti-Rac1 antibody (BD biosciences), anti-KIF5B(Abcam), anti-EGFR (Julia Cordero), anti-Arp3(William Theurkauf).
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