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18 protocols using rmscf

1

Quantifying CFU-GM in Mouse Bone Marrow

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To detect colony-forming unit granulocyte monocyte (CFU-GM), 5 × 104 total bone marrow cells in 10% of the total volume were seeded in semisolid methylcellulose in 80% of the total volume (MethoCult M3231, Stem Cell Technology, France) with 10% of the total volume of Iscove’s modified Dulbecco’s medium (IMDM) supplemented with rm-SCF (100 ng/mL), rm-interleukin-3 (30 ng/mL) and rm-GM-CSF (30 ng/mL) (R&D Systems). Cultures were incubated at 37°C in a humidified atmosphere containing 5% CO2, and colonies were scored 7 days later under an inverted microscope.
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2

Ryk-mediated T-cell development in vitro

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In total, 50 000 total FL cells were obtained from Ryk WT and Ryk KO mice and were co-cultured on confluent layers of OP9 WT/DL1, OP9 Wnt3a/DL1, or OP9 Wnt5a/DL1 mixed in a 1:1 ratio as described previously27 (link) with Alpha MEM 10% FCS containing 50 ng/ml rmSCF, 10 ng/ml rmFlt3L and 10 ng/ml rmIL-7 (all cytokines from R&D Systems, Abinsdon, UK) in 24-well plates. Cells were harvested after 7 and 14 days of co-culture and assessed for T-cell development by flow cytometric analysis. FTOC were done as described before47 (link) using fetal thymic lobes from E14 embryos, which were genotyped for the status of the Ryk deficiency. Thymic lobes were cultured on a nitrocellulose filter on air/medium interphase for 7–14 days, dispersed, and analyzed by flow cytometry.
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3

Ex Vivo Hematopoietic Colony Formation

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BM cells were harvested from femur(s) by flushing with DPBS (BioWhittaker). Whole bone marrow cells were plated at 5 × 104 cells/ml in 1% methylcellulose/Iscove’s Modified Dulbecco’s Medium (IMDM) with 30% FBS (Corning), 1u/ml erythropoietin (Amgen), 5%(v/v) poke-weed mitogen spleen cell conditioned medium (PWMSCM), 50 ng rmSCF (R&D Systems), and 0.1 mM Hemin (Sigma). Cultures were incubated for 6-7 days at 37 °C in a 5% CO2/5% lowered oxygen tension humidified environment while cells were collected at 3% or ambient air (~21%) oxygen. The plates for colonies from both 3% and ~ 21% oxygen were incubated at 5% oxygen as we have previously used this oxygen tension for plating to maximize detection of colony numbers. Cultures were scored for colony forming unit (CFU) – granulocyte (G), macrophage (M), burst forming unit (BFU)-erythroid (E)/colony forming unit (CFU) - granulocyte, erythrocyte, macrophage, megakaryocyte (GEMM) [16 (link), 21 (link)–23 (link), 25 (link)].
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4

OP9 Co-Culture Conditions for Hematopoietic Differentiation

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For different experiments various conditions of OP9 co-cultures were used as follows: OP9-WT, OP9-DL1-GFP, OP9-WT/DL1 (1 : 1), OP9-DLW3A, OP9-DLW5A, OP9-DLW3A/DL1 (1:1), OP9-DLW3A/DL1 (1 : 10) and OP9-DLW3A/DL1 (1 : 100). In all conditions 50 000 total fetal liver cells were cultured on confluent layers of OP9 cells, with AlphaMEM 10% FCS containing 50 ng/ml rmSCF, 10 ng/ml rmFlt3L and 10 ng/ml rmIL-7 (all cytokines from R&D systems, Minneapolis, MN, USA) in a well of 24-wells plate. For different purposes, cells were harvested after 6 h, 24 h, 3, 7 or 14 days of culture and stained for flow cytometric analysis.
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5

Murine Hematopoietic Stem Cell Isolation

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Lineage negative depletion was performed using the Direct Lineage Depletion kit from Miltenyi Biotec to isolate hematopoietic stem cell from frozen murine bone marrow. In short, cells were magnetically labeled with the Direct Lineage cell depletion cocktail and incubated for 10 min at 4°C. Lineage negative cells were subsequently depleted using the appropriate magnetic columns and the MACS separator (Miltenyi Biotec). Directly enriched HSPC were cultured in StemSpan (SFEM) medium supplemented with Pen/Strep (Gibco), 50 ng/ml recombinant mouse (rm) Flt3L, 100 ng/ml rmSCF and 10 ng/ml rmTPO (all from R&D Systems) at 37°C with 5%CO2. Depletion efficiency and purity of lineage negative population was analyzed by flow cytometry with FACSCanto (BD).
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6

Murine Hematopoietic Progenitor Assay

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BM cells flushed from the femurs of the indicated mouse strain were plated at 5×104 cells/mL in 1% methylcellulose culture medium with 0.1 mM hemin (Sigma-Aldrich; St. Louis, MO, USA), 30% FBS, 1 U/mL recombinant human erythropoietin (rhEPO; Amgen; Thousand Oaks, CA, USA), 50 ng/mL recombinant mouse stem cell factor (rmSCF; R&D Systems; cat. # 455-MC), and 5% vol/vol pokeweed mitogen mouse spleen cell conditioned medium. Colonies were scored after 6 days of incubation at 5% CO2 and lowered 5% O2 in a humidified chamber, and granulocyte-macrophage colony-forming units (CFU-GM), erythrocyte burst-forming units (BFU-E), and granulocyte, erythrocyte, macrophage, megakaryocyte colony-forming units (CFU-GEMM) progenitors were distinguished by examining the morphology of colonies. Total number of colonies per femur were calculated.
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7

Hematopoietic Progenitor Cell Assay

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Freshly sorted cells were plated at 200 cells/ml in 1% methylcellulose culture medium supplemented with 30% FBS (Fisher Scientific), 2 mM L-Glutamine (Lonza), 0.1 mM hemin (Sigma-Aldrich), 50 ng/ml rmSCF (R&D Systems), 1 U/ml recombinant human erythropoietin (rhEPO, Amgen), and 5% vol/vol pokeweed mitogen mouse spleen cell conditioned medium. Cells were cultured at 5% CO2, 5% O2 in a humidified incubator, and colonies were scored on day 6 based on morphologies of CFU-GM, BFU-E, and CFU-GEMM progenitors. For high specific activity tritiated thymidine kill assay to determine % CFU in S-phase of the cell cycle, cells were incubated in IMDM media containing either control diluent or 50 mCi high specific activity tritiated thymidine for 30 minutes in the same incubator for cell culture aforementioned before washing and plating. For hCB CFU assay, cells were plated in 1% methylcellulose culture medium supplemented with 30% FBS, 2 mM L-Glutamine, human recombinant EPO (1U/ml), SCF (50 ng/ml), GM-CSF (10 ng/ml) and IL-3 (10 ng/ml) and cultured under the same conditions as for mouse cells. Human CFU-GM and CFU-GEMM colonies were scored on day 14 after culture, as this combination of growth factors does not pick up BFU-E.
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8

Murine Hematopoietic Stem Cell Isolation

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Lineage negative depletion was performed using the Lineage Cell Depletion kit from Miltenyi Biotec, to isolate hematopoietic stem cells from frozen murine bone marrow. In short, cells were magnetically labeled with the Biotin-Antibody Cocktail and incubated for 10 min at 4 °C and subsequently incubated for 15 min at 4 °C with Anti-Biotin Microbeads. Lineage negative cells were subsequently depleted using the appropriate magnetic columns and the MACS separator (Miltenyi Biotec, Bergisch Gladbach, Germany). Directly enriched HSPCs were cultured in StemSpan (SFEM) medium supplemented with Pen/Strep (Gibco), 50 ng/mL recombinant mouse (rm) Flt3L, 100 ng/mL rmSCF and 10 ng/mL rmTPO (all from R&D Systems, Minneapolis, MN, USA) at 37 °C with 5% CO2. Depletion efficiency and purity of lineage negative population were analyzed by flow cytometry with BD FACS Canto II 3L (BD Biosciences, San Jose, CA, USA).
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9

In vitro Expansion of Pro-B Cells

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Sorted pro-B or fraction B-cells from the bone marrow were cultured in pro-B medium (Opti-MEM [Invitrogen] supplemented with 10% fetal bovine serum [FBS], 50 μM β-mercaptoethanol, 2 mM L-Glutamine, 100 U/mL penicillin, 100 μg/mL streptomycin, and indicated concentrations of recombinant murine (rm) IL-7 (Peprotech). Lineage-negative bone marrow cells were prepared with a lineage-depletion kit (Miltenyi) and cultured in Iscove’s Modified Dulbecco Medium (IMDM) with 10% FBS, 50 μM β-mercaptoethanol, 10 mM HEPES, 10 μM non-essential amino acids, 2 mM L-Glutamine, 100 U/mL penicillin, 100 μg/mL streptomycin (all from Mediatech), as well as 50 ng/mL rm SCF (R&D System), 40 ng/mL rm Flt3L, and 5 ng/mL rm IL-7 (all from Peprotech).
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10

Retroviral Transduction of Hematopoietic Progenitors

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LSK and LK sorted cells were stimulated overnight in StemSpan serum-free expansion medium (STEMCELL Technologies) supplemented with rmTPO (recombinant mouse thrombopoietin) (10 ng/ml; R&D Systems), rmFlt3L (50 ng/ml; R&D Systems), and rmSCF (100 ng/ml; R&D Systems). Hematopoietic progenitors were transduced using RetroNectin (Takara Bio Inc.)–coated wells according to the manufacturer’s instructions. Nontissue culture plates were coated with RetroNectin overnight at 4°C and then blocked with 2% BSA in PBS for 30 min. Retroviral supernatant (24 or 48 hours) was centrifuged at 1500g for 1 hour at 32°C and incubated an extra hour at 37°C. After coating, viral supernatant was removed and stimulated cells were immediately added on the virus-coated plates. Cells were cultured in StemSpan medium supplemented with rmTPO (10 ng/ml), rmFlt3L (50 ng/ml), and rmSCF (100 ng/ml) and transduced overnight at 37°C. LZRS-ires-eGFP–, LZRS-Gata3-ires-eGFP–, and LZRS-Bcl11b-ires-eGFP–transduced cells were used for in vitro and in vivo approaches.
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