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15 protocols using alexa 488 secondary antibody

1

Detecting Apoptosis in Mouse Hippocampal Neurons

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Mouse hippocampal neurons were fixed with 4% paraformaldehyde (PFA) and permeabilized with 0.1% Triton X-100 in phosphate buffered saline (PBS) containing 0.5% bovine serum albumin (BSA; Affymetrix/USB, 10857). Following blocking with 0.5% BSA, the samples were incubated overnight with cleaved caspase-3 antibody at 1:1000 dilutions and then with an anti-rabbit Alexa 488 secondary antibody (Jackson ImmunoResearch, 711–545-152). Samples were stained with Hoechst 33342 and visualized under a confocal laser scanning microscope (Carl Zeiss, LSM 700); images were analyzed using ZEN12 software (Carl Zeiss).
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2

Immunostaining of Cartilage Stem Cells

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HCCs were isolated and seeded onto chamber slides for immunostaining. For Abcg2 (ab 3380, Abcam, Cambridge, MA) and Notch-1 (sc-6014, Santa Cruz Biotechnology, Inc., Dallas, TX), immunofluorescence staining was used. Primary antibodies was labeled at 1:400 and 1:200 dilution respectively, followed by Alexa 488 secondary antibody (Jackson Immunoresearch, West Grove, PA), and imaged by an Olympus FluoView™ FV1000 laser scanning confocal microscope (LSCM) (Olympus NDT Inc., MA). Lubrin staining was also performed on isolated HCCs from both superficial 1/3 and deep 2/3 cartilage using a mouse monoclonal antibody (ab 28484, Abcam, Cambridge, MA), and detected with and a Vectastain ABC kit (Vector, Burlingame, CA).
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3

Immunofluorescence Staining of Tight Junction Proteins

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RBMECs were seeded onto fibronectin-coated coverslips, were allowed to grow to confluence and were treated with vehicle, chenodeoxycholic acid or deoxycholic acid (100μM). After 24 hours, cells were fixed with 4% PFA for 5 minutes at room temperature, permeabilized by washing with PBS containing 0.2% Triton X-100 (PBST) and blocked using LiCor blocking buffer (Lincoln, NE). Cells were stained overnight with antibodies specific for ZO-1, ZO-2, claudin 5 and occludin (Invitrogen-Zymed, Irvine, CA), at 1:100. Fluorescent detection using Alexa 488 secondary antibody (Jackson Immuno Research, West Grove, PA) was performed and coverslips were mounted onto a microscope slide with antifade gold containing 4′,6-diamidino-2-phenylindole (DAPI) as a counter stain (Molecular Probes, Eugene, OR).
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4

Immunofluorescence Staining of Aortic SMCs

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Aortic SMC were fixed at 24 hrs after plating by immersion in 2% paraformaldehyde in Dulbecco’s phosphate buffered saline (DPBS). Cells were then washed in a glycine buffer and incubated overnight at 4 °C with primary antibodies against integrin α2 (Abcam, San Francisco, CA, USA), integrin α5 (Milipore Sigma, Burlington, MA, USA), and smooth muscle α-actin (SMα-actin) (Millipore Sigma, Burlington, MA, USA) diluted in a sodium citrate buffer containing BSA and Triton X [24 (link)]. After washing, cells were incubated with Alexa 568 secondary antibody (Invitrogen, Carlsbad, CA, USA) for 1 h at room temperature, washed again and immediately imaged in DPBS. A similar procedure with overnight incubation was followed for the primary antibody against integrin β1 or β3 both pre-conjugated with Alexa 488 (BioLegends, San Diego, CA, USA). For smooth muscle γ-actin (SMγ-actin, Actg2) staining, cells were first fixed with 1% paraformaldehyde in DPBS followed by permeabilization with cold methanol [25 (link)]. Staining was performed as described by using an SMγ-actin primary antibody [26 (link),27 (link)] followed by Alexa 488 secondary antibody (Jackson Immuno Research, West Grove, PA, USA).
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5

Immunofluorescence Staining of FoxO1 in GT1-7 Cells

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Glass coverslips containing the GT1-7 cells from each experimental group were rinsed with ice-cold PBS and fixed using 4% paraformaldehyde in PBS pH 7.4, at room temperature. After fixation, the cells were rinsed with PBS containing 0.1% Triton-X for permeabilization. After rinsing, the cells were incubated for 30 min in a blocking solution of 1% BSA in PBS containing 0.1% Triton-X. Cells were incubated overnight at 4 °C with the primary antibody (1:5000; rabbit anti-FoxO1, Cell signaling # 2880). After rinsing, the cells were incubated with donkey anti-rabbit IgG conjugated with Alexa 488 secondary antibody (1:500; Jackson Immuno Research: West Grove, PA, USA). Slides were then mounted using a medium containing DAPI (DNA staining, red). Photomicrographs were acquired using a Leica confocal laser scanning microscope. The immunoreactive structures were excited using argon or helium-neon green lasers with the excitation and barrier filters set for the fluorochrome used (green or red). Images showing the fluorescence were obtained from sequentially acquired images of slices excited by the laser.
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6

Tubulin Structures Imaging in 144 hpf Zebrafish

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Animals collected at the 6-day stage (precisely 144 hpf) were fixed in 4% PFA and 0.1% Triton X-100. Tubulin structures were marked with a monoclonal mouse antibody against alpha-acetylated tubulin (Cat# T6793, Sigma-Aldrich GmbH, Germany, 1 : 250 dilution) and an Alexa 488 secondary antibody (Jackson Laboratories, USA, 1 : 500 dilution). Nuclear DNA was stained with DAPI (1 : 1000 dilution) and membranes with mCLING–ATTO 647N (Synaptic Systems GmbH, Germany, 1 : 50 dilution). DAPI, tubulin and mCling fluorescence was excited at 405, 488 and 633 nm, respectively, and recorded with a Leica TCS-SP8 confocal microscope equipped with a 63× glycerol-immersion objective. For details, see chapter III in Chartier [34 ].
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7

Immunolabelling of Phosphorylated AKT

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Sections were rinsed with 0.1 M PBS and incubated for 48 h at room temperature with rabbit anti-phospho AKT (1:4000, Cell signaling # 9275). After rinsing, sections were incubated with donkey anti-rabbit IgG conjugated with Alexa 488 secondary antibody (1:400; Jackson Immuno Research: West Grove, PA, USA). Finally, the sections were coverslipped with Fluoromont-G mounting medium (Southern Biotechnology Associates: Birmingham, AL, USA). Photomicrographs were acquired using a Leica confocal laser scanning microscope. The immunoreactive structures were excited using argon or helium-neon green lasers with the excitation and barrier filters set for the fluorochrome used (green). Images showing the fluorescence were obtained from sequentially acquired images of slices excited by the laser.
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8

Immunohistochemical Analysis of c-fos Expression

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To analyze c-fos expression, coronal brain slices were incubated for 1 hr in blocking solution at room temperature (3% NGS, 0.3% Triton X-100) and then for 20 hr with anti-c-fos primary rabbit antibody (1:500, 226.003; Synaptic Systems, Göttingen, Germany) for 24 hr. Sections were washed and incubated with anti-rabbit Alexa-488 secondary antibody (1:500, Jackson Immunoresearch, West Grove, PA) for 2 hr at room temperature. Afterwards, sections were washed, mounted on slides and immediately coverslipped with Fluoromount-G with DAPI (Thermo Fischer). Images were examined by fluorescence microscopy (Leica DM 5000 B) and c-fos positive cells were counted bilaterally from two LC coronal slices for each animal with ImageJ.
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9

Immunofluorescence Assay for Orexin Receptors

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Immunofluorescence assay was performed as described previously.19, 20 In specific, brain slices were incubated with anti‐OxR2 (1:200, GeneTex) or orexin‐A antibody (1:200, MAB763, R&D Systems, USA) for 48 h, and then incubated with Alexa488 secondary antibody (1:1000, 711–545‐152, Jackson Immuno Research, USA) at room temperature for 2 h.
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10

Immunohistochemical Analysis of c-Fos

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To analyze c-fos expression, coronal brain slices were incubated for 1h in blocking solution at room temperature (3% NGS, 0.3% Triton X-100) and then for 20h with anti-c-fos primary rabbit antibody (1:500, 226.003; Synaptic Systems, Göttingen, Germany) for 24 hr. Sections were washed and incubated with anti-rabbit Alexa-488 secondary antibody (1:500, Jackson Immunoresearch, West Grove, PA) for 2 h at room temperature. Afterwards, sections were washed, mounted on slides and immediately coverslipped with Fluoromount-G with DAPI (Thermo Fischer). Images were examined by fluorescence microscopy (Leica DM 5000 B) and cfos positive cells were counted bilaterally from two LC coronal slices for each animal with ImageJ
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