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Synap g2

Manufactured by Waters Corporation
Sourced in United States

The Synap G2 is a laboratory instrument designed for the analysis of molecular interactions. It utilizes surface plasmon resonance (SPR) technology to detect and measure real-time changes in the refractive index at the surface of a sensor chip, which can be used to study a wide range of biomolecular interactions.

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5 protocols using synap g2

1

Quantifying Metabolites via UPLC-QTOF-MS

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A volume of 10 µL of crude homogenates (HOMG) W and HOMG W/O was used for the mass spectrophotometry analysis that was made with ultra-performance liquid chromatography (UPLC) (Acquity HClass, Waters) coupled to a quadrupole-time-of-flight (QTOF) mass spectrometer (Synap G2, Waters). The chromatographic conditions in [33 (link)] were used. The chromatograms were analyzed with MassLynx V4.1 software to tentatively identify compounds in the crude homogenates based on their mass fragments (MS) and retention times (RT) by the use of the Chemspider database.
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2

Polyphenol Analysis by UPLC-QTOF-MS

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High resolution mass spectrometry analysis was performed by Ultra Performance Liquid Chromatography (UPLC) coupled with a Quadrupole Time of Flight (QTOF) Mass Spectrometer (Synap G2, Waters, Milford, MA, USA) as previously reported by Martinez et al. [29 (link)]. Briefly, the analytical separation of polyphenols was performed on an Acquity HSS T33 analytical column (100 mm × 2.1 mm internal diameter, 1.8 μm; Waters, Milford, MA, USA) with a mobile phase that consisted of a gradient formed by combining deionized water with 0.5% of acetic acid as solvent A, and acetonitrile with 0.5% of acetic acid as solvent B. The flow rate of the mobile phase was 0.4 mL/min. High-resolution mass spectrometry analysis was carried out in negative electro spray ionization (ESI-ve) and spectra recorded over a 50–1200 mass/charge (m/z) range. All the compounds were identified based on their retention times (tR) and mass (MS) fragments using MassLynx software (Waters, Milford, MA, USA) and Chemspider database.
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3

Waters Synapt G2 HDMS Analysis

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A Waters® Synap G2 high-definition mass spectrometer (HDMS) system (Waters Inc., Milford, MA, USA) was used for compound separation and detection. The system is setup with a Waters ACQUITY UPLC® hyphenated to a quadrupole mass filter. Additionally, the system comprises of a Triwave™ ion mobility (IM) cell and a high-resolution time-of-flight (TOF) mass analyser. MassLynx™ v. 4.1 (Waters Inc., Milford, MA, USA) software was used to operate the instrument and for data acquisition. Sodium formate clusters were used to calibrate the MS using the Intellistart software function over a mass range of 50–1200 Da. The MS source parameters were optimised for ESI negative mode and were set as follows: source temperature of 120 °C, extraction cone voltage of 4.0 V, sampling cone of 25.0 V, cone gas flow of 10 L/h, desolvation temperature of 350 °C, desolvation gas flow of 600.0 L/h, and a capillary voltage of 2.4 kV for the negative mode. An internal lockmass control standard is used, a 2 ng/µL solution of leucine enkephalin (m/z 555.2693). The lockmass standard is infused directly into the source, added at a rate of 3 µL/min to account for experimental drift in mass by a secondary orthogonal electrospray ionisation probe. Infusion is done intermittently every 10 s.
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4

Quantitative Proteomic Analysis by UPLC-QTOF MS

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An Ultra Performance Liquid Chromatography (UPLC) (Acquity H Class, Waters Corporation, Manchester, UK) coupled by quadrupole-time-of-flight mass spectrometry (Synap G2, Waters Corporation, Manchester, UK) was employed for all high-resolution mass spectrometry analysis. Prior to mass spectrometry analysis, all powdered samples (100 mg) were extracted with 10 mL of acidified water (pH 2), and filtered through 0.22 μm nylon disk filters (Millipore, Billerica, MA, USA). 10 µL of the final solution were injected into the chromatograph. Analytical separation of peptides and proteins was performed on an Acquity BEH 300 C4 analytical column (100 mm × 2.1 mm internal diameter, 1.7 μm; Waters Corporation, Manchester, UK). A mobile phase consisting in a gradient program combining deionized water with 0.1% of acid formic as solvent A and acetonitrile with 0.1% of acid formic as solvent B was used. The initial conditions were 95% A and 5% B. A linear gradient was then established to reach 95% (v/v) of B at 15 min. Total run time was 25 min and post-delay time 5 min. Mobile phase flow rate was 0.4 mL/min.
After chromatographic separation, a high-resolution mass spectrometry analysis was carried out in positive electro spray ionization (ESI+ve). The gas used for desolvation (800 L/h) and Cone (25 L/h) was high-purity nitrogen. Spectra were recorded over the mass/charge (m/z) range 50–1200.
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5

Comprehensive Analysis of N. gaditana Extracts

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Ethanolic extracts of untreated or treated N. gaditana were analyzed by ultra performance liquid chromatography (UPLC) (Acquity H Class, Waters, Milford, MA, USA) coupled with quadrupole time-of-flight mass spectrometry (Synap G2, Waters). Ten-microliter aliquots of the extracts were injected into the chromatograph. Separation was carried out on an Acquity HSST33 analytical column (100 mm × 2.1 mm internal diameter, 1.8 μm). A gradient program that combined deionized water with 0.5% of acetic acid as solvent A and acetonitrile with 0.5% of acetic acid as solvent B was used as the mobile phase. The initial conditions were 95% A and 5% B. A linear gradient was then established to reach 95% (v/v) of B at 18 min (total run time 18 min, post-delay time 5 min, mobile phase flow rate 0.4 mL/min). Afterward, a high-resolution mass spectrometry analysis was carried out in negative electrospray ionization (ESI-ve). Spectra were recorded over the mass/charge (m/z) range of 50–1500. The retention times (RTs) and mass (MS) fragments were used to identify all the compounds. Chromatogram analysis was performed using MassLynx V4.1 software (Waters Corporation, Milford, MA, USA). The Chemspider database was used to validate the identified compounds by matching at least three of their subfragments.
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