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4 protocols using akap 9

1

Western Blot Analysis of AKAP-9, SRPK1, and SRSF1

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Cell lysates were prepared using SDS lysis solution. Protein concentrations were measured using a BCA protein assay kit. Equal amounts of protein were separated by electrophoresis on 10% SDS-polyacrylamide gel and then electrotransferred from the gel to nitrocellulose membranes. The membranes were blocked with 5% non-fat milk solution for 1 h and then incubated with primary monoclonal antibodies against AKAP-9 (Abcam), SRPK1 (Abcam) and SRSF1 (Abcam) overnight at 4°C. Phospho-SRSF1 was incubated with mAb1H4 antibody [29]. α-Tubulin was used as an internal control. After washing with TBS-T, the membrane was incubated with secondary antibodies against goat or mouse IgG. The membrane was then washed, and blots were detected using an enhanced chemiluminescence (ECL) detection system (Thermo) according to the manufacturer's instructions.
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2

AKAP-9 and CIP4 Protein Interactions

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Cells were washed twice with cold PBS and lysed in RIPA buffer (1× PBS, 1% NP40, 0.1% SDS, 5 mM EDTA, 0.5% sodium deoxycholate, and 1 mM sodium orthovanadate) containing protease inhibitors at 4 °C followed by vortex and centrifugation at 14,000 rpm at 4 °C for 10 min. Total proteins (500 ug/sample) were pre-cleaned with 40 μl A-G beads (Santa Cruz) before immunoprecipitation with 3 μg control IgG (Santa Cruz Biotechnology), AKAP-9, or CIP4 antibody at 4°C overnight. After incubation with 40 μl A-G beads at 4°C for 6 hours, the immunoprecipitates were washed with PBS containing 0.2% NP-40 for 5 times. The immunoprecipiated protein complexes were then released by boiling in 2×SDS-PAGE sample buffer for 5 minutes and used for immunoblotting with both AKAP-9 (Abcam) and CIP4 antibodies (Santa Cruz).
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3

Western Blot Analysis of Cellular Proteins

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Cells were harvested by scraper and lysed with Triton buffer 150 mM NaCl, 1% Triton-X100, 0.1% SDS, 50 mM Tris pH8.0, and protease inhibitor cocktail (Thermo Fisher) at 4°C for 20 min. The supernatant was collected after centrifugation for 10 min. Supernatant was transferred to a new tube and the total protein concentration was measured using NanoDrop One spectrophotometer. Equal volume 2X Laemmli sample buffer (1610737, Bio-Rad, Hercules, CA) were added to the supernatant and then heated in 95°C for 10 min. Equal amount proteins were resolved by SDS-PAGE gel for western blot analysis. Antibodies against AKAP9 (1 : 1000), GAPDH (1 : 3000), E-cadherin (1 : 2000), and Rabbit secondary antibody (1 : 5000) were purchased from Abcam (Cambridge, MA). The western blot images were developed using chemiluminescence detection kit (WBKLS0500, Millipore, Billerica, MA) and the ChemiDoc Imaging System from Bio-Rad.
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4

Immunoblotting Analysis of Cytoskeletal Proteins

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Cell lysates were prepared using the RIPA buffer. Protein concentration was measured using a BCA protein assay kit. Equal amount of protein was separated by electrophoresis on a 10% SDS-polyacrylamide gel. The proteins were electrotransferred from the gel to nitrocellulose membrane. The membrane was blocked with 5% non-fat milk solution for 1 h, and then was incubated with primary monoclonal antibody against AKAP-9 (Abcam), E-cadherin (Cell signaling), vimentin (Cell Signaling), N-cadherin (Proteintech) and CIP4 (Santa Cruz) at 4°C overnight. α-Tubulin was used as an internal control. After washing with TBS-T, the membrane was incubated with secondary antibodies against goat or mouse Ig G. The membrane was washed and detected by the enhanced chemiluminescence (ECL) detection system (Thermo) according to the manufacturer’s instructions.
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