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15 protocols using anti e cad

1

EMT Regulation and Src/STAT3 Signaling

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The study protocol was performed according to the principles of the Declaration of Helsinki and the ethics committee of the Affiliated Hospital of Jiangnan University, Wuxi, Jiangsu Province, China. Informed consent was obtained from all patients.
The following primary antibodies were purchased from Abcam (Cambridge, England): anti-E-cad, anti-Vim, anti-Snail, anti-N-cad, anti-Twist, anti-PCNA, anti-Bax, anti-Bcl-2, anti-ZEB1, anti-NEDD9, anti-Myb, and anti-GAPDH. The following primary antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA): anti-t-SRC, anti-p-SRC, anti-t-STAT3, and anti-p-STAT3. PP1, an SRC inhibitor, was purchased from Selleck Chemicals (Houston, TX, USA).
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2

Immunofluorescence Staining of Cell Cytoskeleton

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5 × 104 cells were seeded into slides (Millipore, MA, USA) and fixed with 4% paraformaldehyde (PFA) for 30 min. Slides were rinsed with PBS for 3 times, blocking slides with 5% BSA for 1 h at room temperature and incubating slides with primary antibodies at 4 °C overnight. Next day, rinsing slides with PBS for 3 times and incubating slides with secondary antibodies in the dark at room temperature for 1 h. Antibodies included anti-ROCK1, anti-E-cad and anti-Vimentin, Alexa Fluor® 488 goat and Alexa Fluor® 555 which were purchased from Abcam, Cambridge, MA, USA were used to IF staining. Visualizing nuclei with DAPI in the dark for 5 min. Analyzing slides by fluorescent microscopy (10x).
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3

Protein Expression Analysis of GT1-1 Cells

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The GT1-1 cells were lysed in TNE buffer (50 mM Tris–HCl, pH 7.4, 150 mM NaCl, 1 mM EDTA; all from Sigma-Aldrich, St. Louis, MO, USA) containing 1% Nonidet P-40 (Calbiochem, San Diego, CA, USA) with protease and phosphatase inhibitor cocktails (Roche). The total extracts were centrifuged at 12,000 rpm for 30 min at 4 °C, and the protein concentration was determined with the BCA method (Pierce Biotechnology, Waltham, MA, USA). For Western blot analysis, 40 µg of lysate per lane was loaded onto 10% Bis-Tris SDS-PAGE gels and blotted onto polyvinylidene fluoride (PVDF) membranes. Different blots were incubated with antibodies against anti-Bcl-xl2 (1:1000, Abcam), anti-Bax (1:1000, Abcam), anti-E-CAD (1:8000, Abcam), anti-MDM2 (1:1000, Abcam), anti-p-MDM2 (1:1500, Abcam), anti-MMP2 (1:2000, Abcam), anti-N-CAD (1:10,000, Abcam), anti-p21 (1:2000, Abcam), anti-p53 (1:1000, Abcam), anti-vimentin (1:2000, Abcam), anti-β-actin (1:8000, Sigma) and GAPDH (1:10,000, Sigma) followed by secondary antibodies tagged with horseradish peroxidase (Santa Cruz Biotechnology). Blots were visualized by enhanced chemiluminescence, and densitometry was performed with an Amersham Imager 600. GAPDH levels were analyzed as a loading control.
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4

Comprehensive Western Blotting Methodology

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Western blotting was carried as previously described.28 (link)-30 (link, link) Briefly, an equal amount of protein was separated by sodium dodecyl
sulfate polyacrylamide gel electrophoresis on a 10% gel electrophoresis and
transferred onto a 0.45-µm polyvinylidene fluoride membranes (PALL). The
membranes were blocked in 0.5% BSA at room temperature for 2 hours. The
following monoclonal primary antibodies were used in the Western blot analysis:
anti-NOCA2 (Abcam), anti-glyceraldehyde 3-phosphate dehydrogenase (CST),
anti-Slug (Abcam), anti-N-cad (Abcam), anti-E-cad (Abcam), anti-Vimentin
(Abcam), anti-β-catenin (Abcam), and anti-TCF-8 (Abcam), overnight at 4 °C. The
membranes were washed 3 times with TBST (0.1% Tween-20) for 10 minutes, each at
room temperature. The signal was visualized by chemiluminescence kit.
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5

Protein Expression Analysis in miR-185 Overexpression

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After 48 hours of transfection, cells were harvested and lysed with ice-cold RIPA Lysis Buffer (CWBIO) at 4°C to extract proteins, and the protein concentration was measured using a BCA Protein Assay Kit (Beyotime, Beijing, China). Thereafter, 20 µg of protein of each sample was loaded to each lane on 10% SDS-PAGE gel, and transferred onto polyvinylidene fluoride (PVDF) membrane (Millipore, Billerica, MA, USA) incubated with primary antibodies in blocking solution at 4°C overnight. Then, the membrane was incubated with the secondary antibody for 1 hour. An enhanced chemiluminescence kit (CWBIO) was used for signal development according to the manufacturer’s protocol. The following primary antibodies were used: anti-Bcl-2 (1:1,000), anti-Bax (1:1,000), anti-Caspase 9 (1:1,000), anti-p-Akt (1:1,000), anti-Akt (1:1,000), anti-mTOR (1:1,000), anti-p-mTOR (1:1,000), anti-P70 (1:1,000), anti-Cyclin D1 (1:1,000), anti-wnt3 (1:1,000), anti-β-catenin (1:1,000), anti-E-cad (1:1,000), and anti-GAPDH (1:1,000), which were obtained from Abcam (Cambridge, UK). Anti-Active Caspase 3 p17-specific (1:1,000) and secondary antibodies (1:5,000) were obtained from PTG Company (Protein tech Group Inc., Rosemont, IL, USA). The bands were analyzed using the ImageJ software. The relative expression of proteins in miR-185 overexpressed cells was normalized to that in the negative control (NC) group.
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6

Cell Immunofluorescence Analysis of Adhesion Molecules

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Cell immunofluorescence analysis was performed as described by previous studies (18 (link)). Briefly, the SW620 cells were fixed in 4% paraformaldehyde then permeabilized for 20 min using PBS containing 0.5% Triton X-100. Thereafter, the cells were blocked with 3% BSA containing 0.025% Triton X-100 and 5% FBS (30 min, at room temperature). The cells were then incubated overnight with primary antibodies (anti-E-cad and anti-N-cad, Abcam, Cambridge, UK) at 4°C or using the EdU Proliferation Kit (20 μM EdU for 3 hours, Abcam). After washing three times, the cells were incubated with the appropriate secondary antibodies. They were then washed, after which 4,6-diamidino-2-phenylindole (DAPI; Invitrogen) was used for nuclear counterstaining, for 5 min. Finally, immunofluorescence was visualized using a confocal microscope (LSM710, Carl Zeiss, Shanghai, China).
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7

Immunofluorescence Staining of Oral Tissues

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Antibodies to histatin-1, E-cad, lactoferrin and ASMA were used for immunofluorescence staining of MMCR tissue sections. Xylene and rehydration with serial ethanol dilutions were used for deparaffinization. Slides were washed twice for 5 minutes in 0.25% Triton X-100 for permeabilization and blocked for 2 hours at room temperature with 2% BSA and 10% normal donkey serum in PBS. Slides were incubated overnight at 4°C with the primary antibody diluted in blocking solution (1:100) (Anti-Lactoferrin; Cat. #ab6410-100; Abcam, MA, USA, Anti-Histatin-1; Cat. #ab81089; Abcam, MA, USA, Anti-E-cad; Cat. #ab76055; Abcam, MA, USA and Anti-ASMA; Cat. #MS-113-P0; Thermo Scientific, MA, USA). The next day, the slides were washed twice for 5 minutes in PBS and incubated for 1–2 hours with respective secondary antibodies (Jackson ImmunoResearch laboratories INC., PA, USA) diluted in blocking solution (1:200–800). Vecta shield mounting medium with 4′,6-diamidino-2-phenylindole (DAPI; Cat. #H-1200; Vector Labs, CA, USA) was placed over the slides and covered with a glass coverslip. Slides were analyzed using the Zeiss LSM 710 Confocal Microscope.
Similarly, cultured human MLG derived epithelial cells were cultured on the chamber slides and fixed with 4% paraformaldehyde for immunostaining with antibodies to histatin-1, lactoferrin, E-cad, and ASMA.
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8

Western Blot Assay for Protein Analysis

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Protein preparation and Western blot assay were performed as described previously [31 (link)]. The antibodies used were as follows: anti-TRAIP (ProteinTech, dilution at 1:1000), anti-β-actin (ProteinTech, dilution at 1:4000), anti-RB, anti-P-RB, anti-E2F1, anti-Cyclin D1, anti-Cyclin E1, anti-P21, anti-MMP9, anti-Twist, anti-Slug, anti-E-cad (abcam, all at dilution 1:1000), anti-MMP2, and anti-Vimentin (abcam, all at dilution at 1:500).
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9

Immunofluorescent Staining and Imaging

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The immunofluorescent staining was performed as previously described in the “Flow cytometry” section in Materials and Methods. The additional primary antibodies for immunocytochemical staining were used: rabbit polyclonal anti-NFAT1 (1:500; Abcam, Cambridge, MA, USA), mouse monoclonal anti–E-cad (1:500; Abcam) and rabbit polyclonal anti-CX36 (1:500; Abcam). Secondary antibodies were stained using previously described antibodies noted within the flow cytometry method. Cells were then counterstained with 4′, 6-diamidino-2-phenylindole (DAPI, MilliporeSigma, Burlington, MA, USA) or Hoechst staining dye (Invitrogen). HTS imaging was performed using the Opera Phenix High Content Screening System (PerkinElmer, Waltham, MA, USA). Fluorescent and bright-field imaging were performed using the Eclipse TE2000-U (Nikon, Tokyo, Japan). Confocal imaging and z-stack 3D reconstruction were performed using LSM 800 with Airyscan (Zeiss, Oberkochen, Germany). Analysis was performed using ImageJ (NIH) and Adobe Photoshop (Adobe, San Jose, CA, USA) software.
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10

Immunofluorescent Staining of Primary Mouse HSCs

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Primary HSCs from mice were immobilized in 4% paraformaldehyde. After fixation, cells were washed with PBS and blocked with 5% BSA. Then, cells were incubated with anti-E-cad (1:100 dilution; Abcam) and anti-desmin (1:100 dilution; Abcam) antibodies overnight at 4 °C. Then, cells were stained with fluorescence-labeled anti-rabbit Alexa 594 (1:50 dilution; Dianova)-conjugated antibodies. For nuclear counterstaining, 4,6-diamidino-2-phenylindole (DAPI) was applied.
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