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25 protocols using sm α actin

1

Comprehensive Protein Expression Analysis in Cells

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Western blot analysis was carried out as we described previously [4 (link)]. Whole cell lysate samples were prepared using the RIPA buffer (Thermo Fisher Scientific) supplemented with a protease inhibitor mixture (Roche Applied Science). Antibodies against GAPDH (1:1000, Santa Cruz), smooth muscle α-actin (SM α-actin) (1:1000, sigma), Smooth muscle Myosin heavy chain 11(SMMHC) (1:500, Abcam), SM22α (1:1000; Abcam), calponin1 (1:1000, Sigma), YAP (1:1000, Cell signal technology) and NKX2.5 (1:200, Santa Cruz) were used to examine individual protein expression. Immuno-activity and band density were visualized by the Odyssey system (LI-COR Biosciences) according to the manufacturer’s instructions.
Immunofluorescence staining was performed according to a method described previously [15 (link)]. The following primary antibodies against SM α-actin (1:250, sigma), Smooth muscle Myosin heavy chain 11(SMMHC) (1:200, Abcam), SM22α (1:250; Abcam), calponin1 (1:250, Sigma), YAP (1:250 Cell signal technology) were used. DAPI was stained with ProLong® Gold Antifade Mountant with DAPI (Life technologies). Stained cells were observed on an OLYMPUS microscope.
Flow cytometry was carried out with previous protocol [15 (link)]. Primary antibody against Smooth muscle Myosin heavy chain 11(SMMHC) (1:200, Abcam) was used and Isotype IgG was used as the negative control.
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2

Quantifying Atherosclerosis in LDLR-/- Mice

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To quantify atherosclerosis in LDLR−/− mice that were placed on HCD (Research Diets Inc., D12108C), aortic roots and aortic arch were embedded in OCT and frozen at −80 °C. Serial cryostat sections (6 µm) were prepared using tissue processor Leica CM3050. For lesion characterizations, the thoracic-abdominal aorta and aortic root were stained for ORO, macrophages (anti-Mac3, BD Pharmingen, 553322, 1:900) T cells (anti-CD4, BD Pharmingen, 553043, 1:90; anti-CD8, Chemicon, CBL1318, 1:100), MHC-positive cells (anti-MHCII, Novus Biologicals), and vascular smooth muscle cells (SM-α-actin, Sigma, F-3777, 1:500)73 (link),83 (link). The staining area was measured using Image-Pro Plus software, Media Cybernetics, and CD4+ and CD8+ cells were counted manually.
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3

Dual Immunofluorescence Characterization

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Double immunofluorescence staining was performed on frozen sections using the following antibodies: phospho-TAK1(Thr187) (1∶50; Abcam), 3-Nitrotyrosine (3-NT, 1∶50; Santa Cruz), phospho-p65(Ser536) (1∶50; Abcam), MCP-1 (1∶250; Santa Cruz), and SMα-actin conjugated with Cy3 (1∶500; Sigma). Isotype-matched antibodies served as negative controls. Sections were incubated with the indicated antibodies overnight at 4°C. Immunoreactions were visualized using Alexa Fluor 488-conjugated secondary antibodies (1∶200; Invitrogen). Mounting medium containing DAPI was then applied. Images were acquired using a fluorescence microscope (Nikon, Japan). For quantitative comparison of the expression of indicated molecules, the percent of the positively double-stained area to the total traced area was determined in triplicate.
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4

Antibody-based Protein Detection Protocol

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Antibodies directed against the following proteins are listed in Supplementary Table 2: SRSF1, SM-α-actin, PCNA, p21, EGR1, GFP, Myc, p53, β-actin, Eif-5, KLF5, Bcl-xL.Bcl-xL Angiotensin II (Ang II), and PDGF-BB were from Sigma. Unless indicated otherwise, all other chemicals were from Sigma-Aldrich.
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5

Immunohistochemical Analysis of HMGXB4 Expression

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Immunohistochemistry assay was performed as described in our previous report (Wang et al., 2011 (link)). To detect HMGXB4 expression, LCA and RCA were harvested from WT mice post‐surgery 21 days and fixed in 4% paraformaldehyde, then embedded in paraffin. Paraffin embedded tissues were sectioned at a thickness of 8 μm and then stained with HMGXB4 (Sigma, HPA000725, 1:200) or ACTA2 (SM α‐actin; Sigma, A2547, 1:000) antibody. For detection of primary antibodies, we used avidin‐biotin method with diaminobenzidine substrate as chromogen (brown; Vector Laboratories; Cat. No. SK‐4100). Sections were lightly counterstained using hematoxylin to visualize cell nuclei (blue). Control sections were processed identically as experimental samples except no primary antibody was applied.
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6

Isolation and Characterization of Aortic Vascular Cells

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6-10 week old wild type, OPG−/−, ApoE−/−OPG−/− and ApoE−/−OPG+/+ aortas were incubated in an enzyme mix solution containing 2 mg/ml BSA (Sigma), 1 mg/ml collagenase CLS-1 (Worthington), 0.375 mg/ml soybean trypsin inhibitor (Worthington), 0.125 mg/ml elastase type III (Sigma) for 5 min at 37°C. The adventitia was then removed, the endothelium stripped and the media cut into small pieces that were dispersed in a mixture of 0.6 mg/ml collagenase CLS-2 (Worthington) and 0.25 mg/ml elastase type III (Sigma) in culture medium containing FBS and incubated at 37°C for 1h. The cell suspension was centrifuged and re-suspended in DMEM culture medium (Invitrogen) containing 100 U/ml penicillin, 100 mg/ml streptomycin, and 20% FBS. The cells were split when confluent and cultured in growth media with 10% FBS after passage 3. The cells used for the experiments were primary cultures and subcultures of 3-9 passages.
Cells at passage 1 were plated on glass chamber slides (Lab-Tek, Rockford, IL) and used for cell characterization by immunofluorescence. Cells were stained with antibodies against SMα-actin (Sigma), SM22α (Abcam), desmin (Dako, Carpinteria, CA) and CD31 (BD Bioscience, San Jose, CA). Alexa fluor 594 goat anti-mouse, alexa fluor 594 goat anti-rabbit, and alexa fluor 594 rabbit anti-goat (Invitrogen) were used as secondary antibodies.
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7

Protein Extraction and Immunoblotting Analysis

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The total, cytoplasmic and nuclear proteins were isolated using protein extraction kit (Beyotime) according to the manufacturer’s instructions. After quantitation (BCA kit, Beyotime), protein was separated by electrophoresis on 10% SDS-polyacrylamide gels and transferred onto PVDF membrane. Antibodies against β-actin, β-catenin, smooth muscle myosin heavy chain protein (SM-MHC), Notch1 (Santa Cruz, CA, USA), GAPDH, histone H3, phospho-p38, phospho-ERK1/2 (Cell Signaling Technology, MA, USA) and smooth muscle α-actin (SM α-actin) (Sigma) were used to probe with the interest blots. Finally, protein expression was detected with HRP-conjugated second antibody (Santa Cruz) and ECL (Pierce, IL, USA) luminescence method.
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8

Atherosclerosis Lesion Characterization

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Aortic root was embedded in optimum cutting temperature (OCT) and frozen at −80 °C. Serial cryostat sections (6 μm) were prepared using tissue processor Leica CM3050. Lesion characterizations, including Oil Red O staining of the aortic root and staining for macrophages (anti-Mac3, BD Pharmingen, 553322, 1:900), T cells (anti-CD4, BD Pharmingen, 553043, 1:90; anti-CD8, Chemicon, CBL1318, 1:100), vascular smooth muscle cells (SM-α-actin, Sigma, F-3777, 1:500) and vascular cell adhesion molecule 1 (VCAM-1) (ab134047, 1:100, abcam) were performed as previously described [11 (link),16 ]. All images were captured using a Microscope VS120 Whole Slide Scanner (Olympus) and analyzed using the computer-assisted Image-Pro Plus software (Meida Cybernetics, Bethesda, MD). The quantification of atherosclerotic lesion, Mac3, VSMC, and VCAM-1 staining was performed as previously described [11 (link),16 ]. The number of CD4+ and CD8+ cells was counted manually by blinded observers.
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9

Profibrotic Signaling Pathway Assay

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Tannic acid was from Sigma-Aldrich (catalog # 403040). TGF-β was from EMD Millipore (catalog # GF111). Pharmaceutical grade bleomycin was from Teva Pharmaceuticals. Antibodies for Western blotting against SM α-actin (catalog # A5228), β-actin (catalog # A5441), and α-tubulin (catalog # T6074) were from Sigma-Aldrich; against human collagen-1A1 was from Santa Cruz Biotechnology (catalog # sc-28657); against mouse collagen 1 was from EMD Millipore (catalog # 234167); against Smad2 (catalog # L1603) and phospho-Smad2 (catalog # 13804) from Cell Signaling Technology. The SBE4-Luc plasmid was kindly provided by Dr. Bert Vogelstein (The Johns Hopkins University School of Medicine, Baltimore, MD). pRL-TK plasmid was from Promega.
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10

Protein Extraction and Immunoblotting from Frozen Vascular Samples

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Frozen vascular samples were pulverized by bead-homgenization (TissueLyser, Qiagen, Germantown, MD), suspended in the presence of sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE) loading buffer (125 mmol/l Tris-HCl, pH 6.8, 4% SDS, 20% glycerol, 100 mmol/l PMSF, 10 mg/mL aprotinin, 1 mg/mL leupeptin, 1 mg/mL pepstatin A), and sonicated, as previously reported (Atkins et al. 2005 (link), 2007 (link); Park et al. 2005 (link)). Protein concentration was determined (Pierce BCA, Thermo, Rockford, IL) and lysates (50 μg) were run on 7.5 or 10% SDS-PAGE and immunoblotted with antibodies for GLUT4 (MW∼55 kD – Abcam, Cambridge, MA), pERM (MW∼90 kD), pMYPT (MW∼130 kD – Thr850), and COX-2 (MW∼72 kD – Santa Cruz Biotechnology, Santa Cruz, CA), and MYPT (MW∼130 kD – BD Biosciences, San Jose, CA). All blots were within the linear range and, with the exception of those for pMYPT (normalized to total MYPT), were normalized to SM α-actin (MW∼41 kD) or α-actinin (MW∼100 kD – Sigma, St Louis, MO) the expression of which we have found are unaffected by hypertension (Armoni et al. 2014 (link)). Immunoblots for GLUT4 exhibit multiple bands due to the highly glycosylated nature of this protein (Brosius et al. 1992 (link); Katz et al. 1995 (link); Atkins et al. 2001 (link), 2005 (link), 2007 (link); Park et al. 2005 (link)).
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