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18 protocols using resazurin sodium

1

Screening and Evaluation of Antimicrobial Compounds

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Compounds 2178, 2504, and 2150 were initially provided by Sanofi (Paris, France) for screening and initial experiments. The compounds were then resynthesized and purified at the University of North Carolina, Chapel Hill. Sources of other compounds are listed in Text S1 in the supplemental material. SAR1, TMC207, and cyclohexyl-griselimycin were provided by Sanofi (Paris, France). 8-Hydroxyquinoline (8-HQ), activated charcoal, sodium resazurin, hexaammine cobalt chloride (HexaCo), isoniazid, and rifampin (Rif) were from Sigma-Aldrich, USA, and moxifloxacin hydrochloride (Moxi) was from Santa Cruz Biotechnology, USA.
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2

Determining Antimicrobial Activity of A. confertus

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The MIC was determined by the broth microdilution method. ELISA plates was filled with 100 μL of solution containing 900 μL of 10% BHI and 100 μL of bacterial suspension. Then, serial microdilution (1:1) was performed with 100 μL of A. confertus essential oil until the penultimate well of the plate, with final concentrations between 512 and 8 μg/mL. Bacterial growth controls and sterility controls of the culture medium were performed. Subsequently, the plates were left to incubate at 37 °C (24 h). To read the assays, sodium resazurin (Sigma-Aldrich) was used as a colorimetric indicator of bacterial growth by oxidation–reduction. For this purpose, 20 μL of resazurin was added to each well and, after 1 h, the plates were visually analyzed [70 (link)].
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3

Antibacterial and Antifungal Agents Evaluation

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The antibacterial drugs utilized were amikacin, gentamicin, ciprofloxacin, and imipenem/cilastatin sodium, and the antifungals employed were mebendazole and nystatin (Sigma Co., St. Louis, USA), at an initial concentration of 2500 μg/mL and 1024 μg/mL, respectively. All drugs were dissolved in sterile water. Silymarin powder was obtained commercially from DEG importation (Santa Maria, Brazil). Silibinin was obtained from Sigma Co. The reagent sodium resazurin was utilized as the indicator of bacterial growth; it was also obtained from Sigma Co. and stored at 4°C away from light. In reading the assay, a color change from blue to pink due to the reduction of resazurin indicated bacterial growth [24 (link)].
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4

Synthesis and Purification of Biotin-Linked Compounds

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Compounds 1, 5, and 9c were synthesized as described below. The biotin-diol-azide linker was obtained from Click Chemistry Tools (Scottsdale, United States). Activated charcoal, sodium resazurin, sodium periodate, Triton X-114, isoniazid, rifampicin (Rif), and dimethyl sulfoxide (DMSO) were from Sigma-Aldrich, United States. The tris-(2-carboxyethyl)phosphine HCl (TCEP) and streptavidin-agarose beads used for enrichment and purification were from Thermo Fisher Scientific, United States.
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5

Cytotoxic Activity Evaluation of P. lingue

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This cytotoxic activity was evaluated using the method AlamarBlue described by Nakayama et al. (1997) (link). The adherent cells of Jurkat and Kasumi-1, were plated onto 96-well microplates (2 × 10 4 cells/mL), and after 24 h were washed with PBS and subsequently incubated with the extracts of P. lingue (100 μg/mL) for 48 h. After incubation, the medium was aspirated and 200 mL of sodium resazurin (Sigma-Aldrich, USA) solution prepared in culture medium without serum was added (1 mg/mL), the solution was in contact with the cells for 4 h. Then, 100 μL of the medium was transferred to 96-well black plates and the reduction of resazurin was measured by fluorescence analysis (λ Ex. = 560 nm, λ Em. = 590 nm) performed on a microplate reader FlexStation 3. Cell viability was normalized assuming control as 100%.
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6

Cytotoxicity of Cyanotoxin on Caco-2 Cells

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The effect of various concentrations of CYN on the viability of Caco-2 cells was evaluated by using sodium resazurin (7-hydroxy-3H-phenoxazin-3-one-10-oxide sodium salt, Sigma). The cells were seeded at a density of 2.5×10 4 cells/cm 2 in 24-well plates and supplemented with 1 mL of DMEMc. After differentiation took place, cells were exposed to various concentrations of CYN (0.8, 2, 5, 10, 20 µg/mL prepared in DMEMc without fetal bovine serum) for 24 and 48 h. After exposure, the medium was withdrawn and the culture was washed with phosphate buffered saline (PBS, Hyclone). Then 500 µL of resazurin solution (10 µg/mL in DMEMc without serum) were added and it was incubated for 2 h at 37°C, 5% CO2 and 95% relative humidity. A volume of 100 µL for each condition studied was transferred to a 96-well plate and resazurin reduction was measured colorimetrically (570 and 600 nm) using a PowerWave HT microplate scanning spectrophotometer (BioTek Instruments, USA).
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7

Comprehensive Profiling of Phytochemicals and Antibacterial Activity

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Acetic acid, methanol, sodium chloride, and sucrose were purchased from Chembur (Piekary Śląskie, Poland), trifluoroacetic acid purchased from Honeywell Riedel-de Haen (Seelz, Germany). HPLC-grade methanol and acetonitrile were purchased in Merck (Darmstadt, Germany). Plant culture media components, plant growth regulators NAA (naphthalene-1-acetic acid), BAP (6-benzylaminopurine) and IBA (indole-3-butyric acid) and agar were purchased in Duchefa Biochemie (Haarlem, Netherlands). The following commercially available standards for HPLC analyses were used: verbascoside, isoverbascoside, verbenaline and hastatoside (ChromaDex®, Los Angeles, California, USA) and caffeic acid, chlorogenic acid, ferulic acid, protocatechuic acid, rosmarinic acid, vanillic acid (Sigma-Aldrich Co., Munich, Germany). Scutellarin, scutellarein and apigenin 7-glucuronide obtained from ChemFaces (Wuhan, Hubei, China). Bacterial culture media: nutrient agar (NA), Müller-Hinton Broth (MHB) and Müller-Hinton agar (MHA) were purchased in BTL (Łódź, Poland). Resazurin sodium was purchased from Sigma-Aldrich Co. (St. Louis, USA). Ferrous chloride (FeCl2) was obtained from Carlo Erba (Milan, Italy). Unless indicated otherwise all chemicals were purchased from Sigma-Aldrich (Milan, Italy).
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8

Efflux Pump-Mediated Antibiotic Resistance Evaluation

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To verify the occurrence of efflux pump-mediated resistance, MIC values of amikacin, ceftazidime or norfloxacin were determined in the presence or absence of a carbonyl cyanide m-chlorophenylhydrazone (CCCP, Sigma–Aldrich) solution at the subinhibitory concentration. CCCP is a decoupler from oxidative phosphorylation that interrupts the proton gradient of membranes. Microtitration plates were incubated at 37°C for 24 hours, and following this time 20 μl of a 0.01% (w/v) aqueous Resazurin sodium (Sigma–Aldrich) solution was added to each well. These plates were incubated for 1 hour at room temperature, where following this period a reading was performed taking into account that a change in coloration from blue to pink indicated the occurrence of bacterial growth due to resazurin reduction [42 (link), 43 (link)]. As a criterion for classifying the occurrence of resistance mediated by the efflux pump phenotype, a minimum of a 2-fold antibiotic MIC reduction in the presence of CCCP was necessary [22 ].
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9

Antimicrobial Properties of Silver Nanoparticles

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Silver nanoparticles solution (4000 µg/ mL with the particle size of 35 nm) was purchased from Pars Nano Nasb Co (Tehran, Iran) and sterilized by filtration through 0.22 µm filters before use. Peptone water, phosphate buffered saline (PBS), Luria-Bertani (LB) broth and agar, Agar-agar, and resazurin sodium were obtained from Sigma Chemical Co (St. Louis, MO., USA). All other chemicals were purchased from Merck (Darmstadt, Germany). The plant, Zataria multiflora Boiss, was purchased from local groceries. Staph. aureus ATCC 25923 and Salm. Typhimurium ATCC 14028 were obtained from the Department of Food Hygiene and Quality Control, Urmia University, Urmia, Iran.
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10

Antibiotic Resistance Modulation Assay

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The antibiotics used were amikacin, gentamicin, ciprofloxacin, and imipenem. These were purchased from Sigma-Aldrich Co. (St Louis, MO, USA). The stock solutions of the antibiotics (5 mg/mL) were prepared in sterile water and then diluted to 2,500 μg/mL, which was used for the experiments. Resazurin sodium (Sigma-Aldrich Co.) was used as an indicator of the growth of bacteria.
The Gram-negative bacteria used in this study were E. coli (25922) and P. aeruginosa (9027). The Gram-positive bacterium that was used in this study was S. aureus (25923). These were used for the determination of minimal inhibitory concentration (MIC). However, for the modulation of the antibiotic activity P. aeruginosa 03, E. coli 06, and S. aureus 10 were used. Their origins and resistance profiles to antibiotics are shown in Table 1. All the strains were obtained from the Laboratory of Clinical Microbiology of the Federal University of Paraíba (João Pessoa, PB, Brazil) and maintained on nutrient agar slants at 4°C.
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