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8 protocols using glutathione sepharose

1

GST-RXRα and His-GSK-3β Protein Interaction

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The constructs of pGEX-4T-1-GST-RXRα and pET-22b-His-GSK-3β were transformed into E. coli. BL21 and E. coli. BL21 (DE3) respectively. Both cells were induced with 1 mM IPTG at 25ºC for 16 h. Bacterial pellets were sonicated and centrifuged. The supernatants were mixed with Glutathione-Sepharose (Thermo Scientific) and Ni-NTA agarose (Qiagen), for purification of GST-RXRα and His-GSK-3β, respectively. Immobilized GST-RXRα protein was incubated with 1 μg His-GSK-3β protein in 500 μl of 150 mM NaCl, 100 mM NaF, 50 mM Tris-HCl, pH 7.6, 0.5% NP-40 and 1 mM PMSF at 4 °C for 2 h. After thoroughly washing, bound proteins were eluted with elution buffer (20 mM Tris-HCl, pH 8.0; 10 mM GSH; 1 mM PMSF; 5 mM DTT) and processed for SDS-PAGE.
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2

GST Pull-down Assay for Nur77-Akt Interaction

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GST pull-down assays were carried out as previously described39 (link). GST-Nur77 LBD or its point mutants, and His-Akt were expressed in Escherichia coli strain BL21, and purified using glutathione ­Sepharose (Thermo Fisher) or Ni-­NTA agarose (Qiagen), respectively. The bead­-bound GST­-fusion proteins (2 μg) were incubated with His-­tagged protein (1 μg) in the presence or absence of PDNPA (10 μM) in 1 ml of modified ELB (50 mM Tris­-HCl, pH 7.6, 100 mM NaF, 150 mM NaCl, 0.5% Nonidet P-­40 and 1 mM PMSF) at 4 °C for 1 h. Beads were washed with modified ELB three times, and resuspended in SDS loading buffer for western blotting.
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3

Expression and Purification of GST-JAK1 NLS

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Recombinant human GST-JAK1 NLS fragment was expressed and purified from bacteria. Briefly, transformed E. coli Rosseta BL21 were grown with vigorous shaking at 37 °C in LB medium. At mid-log phase of growth, protein expression was induced by 0.1 mM isopropyl β–D-1-thiogalactopyranoside (IPTG) for 4 h at 37 °C. The cells were collected and lysed in lysis buffer (1× PBS, 10mM EGTA, 10mM EDTA, 0.1% Tween 20, 250mM NaCl, add DTT, lysozyme and PIC before use). The slurry was sonicated at 40% amplitude: 10 sec on, 20sec off with a total “on” time of 3 mins. The lysate was clarified (15 mins, 15000 rpm, 4 °C) and incubated for 1 h at 4 °C with glutathione-Sepharose (Thermo Scientific, IL, U.S.A). The sepharose was washed 3 times with IP lysis buffer (50mM Tris pH 7.4, 150mM NaCl, 1% Triton-X100, 1% NP40, 2mM EDTA, 0.1% Tween 20). HEK293T cells were transduced with different Flag-KPNA constructs. 48 hrs after transfection, cells were lysed with IP lysis buffer, clarified and pre-cleared with glutathione-Sepharose. Pre-cleared lysate was incubated with GST-NLS fragment bound to glutathione-Sepharose for 2 hrs at 4 °C. The sepharose was then washed 3 times with IP wash buffer (50mM Tris pH 7.4, 300mM NaCl, 1% Triton-X100, 1% NP40, 2mM EDTA, 0.1% Tween 20) and eluted by boiling in 1× SDS sample buffer for 5 mins at 95 °C.
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4

GST-VRK2 Interaction Analysis

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IP lysis buffer containing protease and phosphatase inhibitors was used for lysis of pancreatic cancer cells. After centrifugation, the supernatant was collected, and 10 μg of the GST-VRK2 fusion protein was added for incubation overnight at 4°C. The next day, 40 μL of glutathione-Sepharose (Thermo, G2879) was added for another 4-hour incubation at 4°C. The beads were washed 3 times with wash buffer, and 1× loading buffer was then added for western blot analysis.
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5

Quantitative GST-Protein Binding Assay

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The concentration of purified recombinant proteins was measured using Bradford’s reagent (Bio-Rad, 5000202). About 0.25 to 2 μg of each protein was used in a binding reaction. Binding reactions were carried out in a binding buffer containing 25 mM Hepes pH 7.5, 12.5 mM MgCl2, 300 mM KCl, 0.1% NP-40, 1 mg/ml bovine serum albumin, 1 mM DTT. GST and His-tagged proteins were mixed in binding buffer to a total volume of 200 μl and incubated in a rotator for 1 h at 4 °C. Glutathione-sepharose (Thermo-Scientific, 25236) were washed thrice in binding buffer and then added to binding reactions at a packed bead volume of 10 μl per reaction. After another 1 h incubation at 4 °C with rotation, beads were washed thrice in washing buffer (25 mM Hepes pH 7.5, 12.5 mM MgCl2, 400 mM KCl, 0.5% NP-40) and eluted by boiling for 5 min in 2× SDS buffer (100 mM Tris-Cl pH 6.8, 4% SDS, 0.2% bromophenol blue, 20% glycerol). Samples were then analyzed by SDS-PAGE followed by Western blotting.
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6

Influenza Virus Neuraminidase Activity Assay

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Rosetta 2 cells and SEC molecular weight standard were from Agilent. Imidazole, isopropyl β-D-1-thiogalactopyranoside (IPTG), 1 ml HisTrap Fast Flow crude columns, glutathione-sepharose, Tris, phosphate, citric acid, CaCl2, protease inhibitor cocktail (PIN), Sf-900 III serum free medium (Sf-900), FreeStyle 293 (293F) cells, FreeStyle 293 expression media, simple blue stain, Novex WedgeWell 4 to 12% Tris-Glycine SDS-PAGE gels, Novex sharp unstained protein standard, Maxisorp 96-well plates, and BCA protein assay kit were obtained from Thermo Fisher Scientific. Centrifugal filters (10 and 30 kDa), polyethylenimine, and 4-methylumbelliferyl-α-D-N-acetylneuraminide (MUNANA) were acquired from Amicon, Polysciences, and Cayman Chemical, respectively. Bovine fetuin, 4-methylumbelliferone sodium salt (4-MU), o-phenylenediamine dihydrochloride, valproic acid, and HRP-linked peanut agglutinin were purchased from Sigma. Low protein binding 96-well black clear bottom fluorescent assay plates were from Corning. Specific-pathogen-free hen’s eggs were purchased from Charles River Labs. The reassortant Influenza A viruses WSNH1N1/BR18 (N1 virus), which carries the HA and NA genes from the strain A/Brisbane/02/2018 (H1N1), and WSNN2-KS17 (N2 virus), which carries the N2 gene from the strain A/Kansas/14/2017, were generated for prior studies (53 , 72 ).
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7

Expression and Purification of Bromodomain Proteins

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Yeast Bdf1 bromodomain 1 (residues 132–263) or 2 (residues 317–430) and human Brd4 bromodomain 1 (residues 22–204) were cloned into pGEX-4T1 as GST-tagged proteins. Expression was induced in E. coli strain BL21 (DE3) grown in LB medium with kanamycin (50 μg/mL) at 37°C by adding 0.5 mM IPTG at OD600 of 1 and then incubated for 16 h at 16°C. Cells were lysed by sonication in Tris-HCl 50 mM pH 7.5, NaCl 150 mM and protease inhibitors. Clarified lysate was incubated with glutathione sepharose (Fisher, ref. W7349W) and washed in Tris-HCl 50 mM pH 7.5, NaCl 500 mM, NP-40 1%. Bound proteins were eluted in glutathione 10 mM.
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8

GST-tagged SV2C-L4 Protein Binding

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GST-tagged SV2C–L4(454–580) protein (100 μg) was incubated with 50 μl of glutathione Sepharose (Fisher Scientific, Ballycoolin, Ireland) for 1 h at 4 °C. After washing with 1 ml of binding buffer30 (link)32 (link), resin was incubated with different concentrations of rA, rAΔHCN or rA(W985L) DC in binding buffer. After washing 3 times with 1 ml of binding buffer, bound proteins were eluted by LDS sample buffer containing DTT with a final concentration of 50 mM. The reduced samples were analyzed by SDS-PAGE followed by Western blotting, using antibodies against LC/A or GST.
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