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12 protocols using tw100f 4

1

Wnt Pathway Inhibition in Xenopus Embryos

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DMSO, 1 mM palmostatin or 100 μM Wnt-C59 were loaded into a needle pulled from a 1 mm glass capillary tube (TW100F-4, World Precision Instruments) using a P-87 Micropipette Puller (Sutter Instrument). Embryos were placed in a mesh-bottomed dish with 1/10X MMR 3% Ficoll and microinjected in both blastomeres with 1 nl of the appropriate solution using a Picospritzer III microinjection system (Parker) equipped with a MM-3 micromanipulator (Narishige). Injected embryos were transferred to a new dish and incubated at 23°C in 1/10X MMR 3% Ficoll until stages 6–9, then processed for immunostaining.
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2

Intracellular Recordings of Mechanosensory Neurons

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The experimental rig consisted of two mechanical micromanipulators type MX-1 (TR 1, Narishige, Tokyo, Japan) and two amplifiers (SEC-05X, NPI Electronic, Tamm, Germany) (Kretzberg et al., 2016 (link)). Neuronal responses were recorded (sample rate 100 kHz) and analyzed using custom-written MATLAB software (MATLAB 9.1-9.5, MathWorks, Natick, MA, United States). We performed intracellular single and double recordings from mechanosensory touch cells, while injecting current into one T cell soma. For these current clamp recordings, the cell soma was impaled with borosilicate microelectrodes (TW100F-4, World Precision Instruments Inc., Sarasota, FL, United States) pulled with the micropipette puller P97 Flaming Brown (Sutter Instruments Company, Novato, CA, United States). The glass electrodes were filled with 3 M potassium acetate and had resistances of 15–30 MΩ. The neurons were identified by the size and the location of their cell bodies with a binocular microscope (Olympus szx7, Olympus, Tokyo, Japan) as well as by their firing pattern (Nicholls and Baylor, 1968b (link)).
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3

Mosaic Labeling of Müller Glia in Zebrafish

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Microinjections were performed using a borosilicate glass capillary needle (World Precision Instruments, TW100F-4) connected to a Pneumatic Picopump injector (World Precision Instruments). To generate mosaic labelling of MG, 6.5 pg of pTol2-tp1bglob:eGFP-CAAX;cmlc2:eGFP or pTol2-tp1bglob:mCherry-CAAX;cmlc2:GFP was co-injected with 25 pg of purified capped Tol2 transposase mRNA in a volume of 0.5 nl, into one-cell-stage zebrafish embryos. To establish the Tg(tp1bglob:eGFP-CAAX) stable line, injected embryos were screened for GFP expression in the heart at 48-72 hpf. The F1 generation was screened for eGFP-CAAX expression to identify founder fish with germline integration and stable transmission to offspring. Positively identified F1 larvae were grown to adulthood and a stable transgenic line was established based on F2 generation with the strongest and most pervasive expression.
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4

Viral Injections in Zebrafish Retina

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Viral injections were performed as previously described (Beier et al., 2016 (link); Ma et al., 2020 (link)). Briefly, VSV and lentivirus stock was diluted to final working concentrations (described in the "Results" section) with DMEM (11995073; Fisher Scientific), with Fast Green dye (BP123-10; Fisher Scientific) as the injection marker. Glass capillaries (TW100F-4; World Precision Instruments) were pulled into injection needles with a pipette puller (P-97; Sutter Instruments), and the tips were trimmed to create a ~10 μm opening. The injection needle was mounted into a microelectrode holder connected to a pneumatic PicoPump (World Precision Instruments). For retina injection, 3 dpf larvae were anesthetized in Tricaine (0.013% w/v, AC118000500; Fisher Scientific) and mounted laterally inside the center chamber of a glass-bottom dish (P50G-1.5-14-F; MatTek) with 1.5% low melting-point agarose (BP1360; Fisher Scientific). 0.5 nl of virus solution was injected inside the temporal retina.
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5

Microinjection of Rhodamine Tubulin in Neurons

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For chick neurons, microinjection pipettes (TW100F-4, World Precision Instruments, Inc. Sarasota, FL) were pulled on a Brown and Flaming horizontal pipette puller. For Aplysia neurons, microinjection pipettes (1B100F-4, World Precision Instruments) were pulled on a Narishige PP830 vertical pipette puller. Pipettes were then back-loaded with 1 mg/ml rhodamine tubulin (Cytoskeleton, Inc., Denver, CO, USA) in injection buffer (100 mM PIPES pH 7.0, 1 mM MgCl2, 1 mM EGTA) as previously described84 . Before injection, tubulin was thawed, spun at 13,000 g for 30 min, kept on ice and back-loaded into pipettes pre-chilled to 4 °C. Microinjection was performed using the NP2 micromanipulator and FemtoJet microinjection system (Eppendorf North America, New York, NY), visualized with a Nikon ECLIPSE TE2000 microscope using phase contrast optics with a 40x objective. Alternately, microinjection was performed using a Narishige hydraulic micromanipulator with injection pressure supplied from a 3 ml luer-lock syringe.
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6

Germ Cell Visualization Assay

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For proof of concept, sodium dihomo-gamma-linolenic acid was dissolved in water at a concentration of 10 μM. All other fatty acids and metabolites arrived in ethanol and were diluted to 1 or 2.5 μM with water, mock injections used 1% ethanol. A glass capillary tube (World Precision Instruments Inc., TW100F-4) was drawn into a needle, loaded, and used to inject into the gonad syncytium of the OD95 strain using an inverted light microscope. For each concentration of fatty acid metabolite, 8–12 individual nematodes were injected. Nematodes were recovered on NGM seeded with E. coli for 2 hours at 20˚C. Nematodes were then transferred to a drop of 0.1 mg/mL levamisole on a 2% agarose pad and a coverslip was applied. Germ cell membrane and nuclei were viewed with laser excitation at 488 and 561 nm (filtered at 495/535 nm and 600/670 nm for GFP and mCherry excitation/emission) and imaged on a Leica TCS SP5 confocal microscope with a 63X oil immersion lens. Images were processed identically using Adobe Photoshop CS4. The mean number of defective germ cells per injected worm was determined, and two-tailed student’s t test was used to compare the number of defective germ cells in injected worms compared to mock injections.
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7

Microinjection of 2-cell Embryos

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At stage 2 (2-cell embryo), embryos were transferred to a 1/9X MMR + 3% Ficoll. IVT reticulocyte lysate was backloaded into a needle pulled from a 1 mm glass capillary tube (TW 100F-4, World Precision Instruments) using a P-87 Micropipette Puller (Sutter Instrument). Embryos were placed in a mesh-bottomed dish and microinjected in both blastomeres with 2 nL of the IVT reticulocyte lysate using a Picospritzer III microinjection system (Parker) equipped with a MM-3 micromanipulator (Narishige). Injected embryos were transferred to a new dish and incubated at 23°C in 1/9X + 3% Ficoll for several hours, then buffer exchanged for 1/10X MMR overnight.
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8

Microinjection of Intestinal Organoids with Bacteria

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Differentiated human intestinal organoid (HIO)s were generated from human pluripotent stem cell (hPSC)s, maintained and used for microinjection with commensal bacterial culture as described previously (Hill et al., 2017 ). HIOs were maintained in media containing EGF, Noggin, and R-spondin (ENR media) in 60 μl Matrigel (8 mg/ml) without antibiotics prior to microinjection experiments. For hypoxia experiments, HIOs were put in a hydrated and sealed chamber filled with 1% O2, 5% CO2, and balance N2 and maintained at 37°C for 16 hours. HIO microinjection with PBS, live- or heat killed E. coli were performed under microscopic guidance with the aid of thin wall glass capillaries (TW100F-4, World Precision Instruments) after shaping them with a P-30 micropipette puller (Sutter Instruments). After the microinjection, the HIO culture media was carefully aspirated and the wells were rinsed with sterile PBS and maintained in ENR media containing penicillin and streptomycin to remove any bacteria.
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9

Intracellular Recordings of Mechanosensory T Cells

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We performed intracellular single recordings on the mechanosensory T cells using sharp electrodes filled with 4 M potassium acetate (pH adjusted to 7.4). Electrode resistances ranged from 12 to 35 MΩ (mean = 24.26 MΩ, std = 5.06 MΩ). Electrodes were pulled from borosilicate thin-wall capillaries (TW100F-4, World Precision Instruments Inc., Sarasota, FL, United States) with a P97 Flaming Brown micropipette puller (Sutter Instruments Company, Novato, CA, United States). We performed the recordings using a mechanical micromanipulator type MX-1 (TR 1, Narishige, Tokyo, Japan) and a BA-1 s amplifier (NPI Electronic, Tamm, Germany). We identified the T cells according to their soma location and response patterns (Nicholls and Baylor, 1968 (link)). Current was injected into the soma while recording the membrane potential (sample rate 10 or 100 kHz; custom MATLAB software).
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10

CSF Collection and Phosphate Analysis

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CSF was collected from the cisterna magna of one year old
Slc20a2 +/− and +/+ mice as in Liu et al. 2008
(19 ). Briefly, glass capillary tubes
were purchased from World Precision Instruments, TW100F4 and pulled on a Sutter
P-87 flaming micropipette puller, with the heat index set at 100 and the
pressure index set at 330. Pipette tips were cut with scissors such that the tip
has an inner diameter of ~0.5mm. CSF collection took less than five
minutes per animal and yielded an average volume of
4.5μL. CSF was spun down for 10min at 2000rpm at
4°C, transferred to a new tube and stored at 4°C until analysis of
phosphate levels. Phosphate levels were determined with the QuantiChrom
Phosphate Assay Kit (Bioassays Systems, DIPI500).
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