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5 protocols using galectin 3

1

Multiparametric Flow Cytometry Analysis

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We performed flow cytometric analysis using a FACSAria III instrument (BD Biosciences) and analyzed the data using FlowJo software (Tree Star Inc, Ashland, OR). We used antibodies that had specificity to the following proteins: F4/80 (BM8; BioLegend), Ly6G (1A‐8‐Ly6g; BioLegend), CD11b (M1/70; BioLegend), galectin‐3 (M3/38; BioLegend), MERTK (Mer; 2B10C42; BioLegend), CD206 (15‐2; BioLegend), ERK1/2 Phospho (Thr202/Tyr204) (6B8B69; BioLegend) and STAT3 Phospho (Tyr705) (13A3‐1; BioLegend). We analyzed galectin‐3 (M3/38; BioLegend) using a True‐Nuclear Transcription Factor Buffer Set (BioLegend), ERK1/2 Phospho (Thr202/Tyr204) (6B8B69; BioLegend) and STAT3 Phospho (Tyr705) (13A3‐1; BioLegend) using ice‐cold 90% methanol after fixation.
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2

Immunofluorescent Detection of αS and Galectin-3

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Sections of paraffin embedded tissue were subjected to deparaffinization, rehydration, steaming in DAKO target retrieval solution pH 6.1 for 30 minutes, and incubation at room temperature with Protein Block (X0909, DAKO) for 1 h. For immunofluorescent staining, the sections were incubated with primary antibodies to αS (NACP98, 1:500, rabbit polyclonal21 (link)) and Galectin-3 (1:250, mouse monoclonal, Biolegend) at 4 °C overnight, followed by 1.5 hours of incubation with secondary antibodies (1:500) after washing. Non-specific fluorescence signals were blocked by staining with Sudan Black. Sections were coverslipped with Vectashield mounting media (H-1200, Vector Laboratories, Burlingame, CA) and viewed with confocal microscopy.
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3

Kidney Drp1 Phosphorylation Immunoblot

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Kidney cortical tissue was prepared for immunoblot analysis with antibodies against phosphorylated and total Drp1. Kidney cortex samples were homogenized in extraction buffer containing 50 mM HEPES, pH7.4, 150 mM NaCl, 0.5% Triton X-100, 0.025 mM ZnCl2, 0.1 mM Pefabloc SC Plus (Roche, Basel, Switzerland), EDTA-free protease inhibitor cocktail tablet (Roche, Basel, Switzerland), and phosphatase inhibitor cocktail (Sigma-Aldrich, St. Louis, MO, USA). Protein concentration was determined using the Micro BCA Protein Assay Kit (ThermoFisher Scientific, Waltham, MA, USA).
Western blot was performed by separating 15 µg of total protein in 7% SDS-polyacrylamide gels and transferring it onto PVDF membranes (Immobilon-P Millipore, Burlington, MA, USA). Membranes were incubated in skimmed milk blocking solution (5%) for 1 h and incubated overnight at 4 °C with galectin-3 (1:500; 126701, Biolegend, San Diego, CA, USA) in 2.5% skimmed milk. HRP-conjugated anti-mouse IgG antibody was used as secondary antibody. β-Actin antibody (1:20,000; BS1003, Bioworld, Dublin, Ireland) was used as loading control.
Proteins were detected in films (AGFA CURIX, Mortsel, Belgium) after 3-min incubation with Clarity Western ECL Substrate (Bio-Rad, Hercules, CA, USA). Protein bands were quantified by densitometry with the ImageJ software.
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4

Subcellular Fractionation and Western Blotting

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Cells were lysed in SDS lysis buffer (100 mM NaCl, 500 mM Tris, pH 8.0, 10% SDS). For detection of NF-κB p100/52, p65 and c-Rel, a nuclear extraction kit (Thermo Scientific, MA, USA) was used to separate nuclear and cytoplasmic fractions. Cell extracts were subjected to 8–15% sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Antibodies for Western blotting include: Galectin-3 (cat. 125402) (Biolegend, San Diego, USA), Galectin-1 (cat. Ab25138) and TSG101 (cat. ab30871; detects murine and human proteins) (Abcam, Cambridge, MA, USA), CD63, Erk1/2, NF-κB p65 (sc-8008 Figure 4G) (Santa Cruz Biotechnology, USA), phospho-Erk1/2, NF-κB p65 (cat. 8242) and calreticulin (cat. 2891S; detects murine and human proteins) (Cell Signaling Technology, USA), NF-κB p100/52 (cat. 06–413) (Millipore, USA). Gapdh (Chemicon International, USA or Millipore MAB374), α-tubulin (Oncogene Science, Cambridge, USA), lamin A, Histone H3 (Cell Signaling Technology, USA) or β-actin (cat. GTX109639, GeneTex) were used as a loading control.
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5

Multivalent Glycan-Binding Protein Assay

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Recombinant FC chimera containing siglec-3, siglec-5, E-selectin and galectin-3 were obtained from Biolegend (San Diego, CA). The GBPs were processed as described by Blixt et al35 (link). Briefly, a 25 µg/ml of the GBP solution was mixed with secondary and PE-labelled tertiary antibody in a ratio of 1:0.5:0.25 and incubated at 37 °C for 30 min. After formation of the multivalent GBP-antibody complexes, a 10 µl aliquot was added to the microsphere mixture in a well of 384 well plate, and further incubated for 1 h with shaking on a shaker set at 550 r.p.m. (IKA MTS4, Wilmington, NC). The microsphere-GBP complexes were washed with 25 mM Tris-HCl buffer pH 7.5, containing 75 mM of NaCl, three times and resuspended in the same buffer. The beads-GBP complexes were read using a Luminex FM3D machine as described above.
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