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6 protocols using mir 22 inhibitor

1

Silencing EZH2 and HSP90 in HUVECs

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Specific siRNAs for EZH2 and HSP90, miR-22 mimic, miR-22 inhibitor, control mimic, and control inhibitor were obtained from GenePharm (Shanghai, China). pcDNA3.1-HA plasmid with EZH2 overexpression (pcDNA3.1-HA-EZH2) was bought from Shanghai Genechem Co., Ltd. (Shanghai, China). Lipo6000 (Cat. No. D2107, Beyotime) was used to transfect these oligonucleotides or plasmid into HUVECs following the protocol of the manufacturer. The corresponding sequences were as follows: siEZH2, 5′-CCAUGUUUACAACUAUCAA-3′; siHSP90-sense 5’-TCGTCAGAGCTGATGATGAAGT-3’; siNC, 5′-UUCUCCGAACGUGUCACGU-3’. The efficiency of transfection was validated by comparing the levels of EZH2 and HSP90 between transfected and controlled cells by Western blot.
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2

Optimization of miRNA Mimics and Inhibitors

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The mimics control with scrambled sequence, miR-106a mimics, miR-106b mimics, miR-124 mimics, inhibitor control with scrambled sequence, miR-106b inhibitor, miR-124 inhibitor, miR-22 inhibitor, and miR-29b inhibitor were purchased from GenePharma (GenePharma Co., Ltd., Shanghai, China). Transfection of miRNA mimics/inhibitor or their corresponding control (20 nM) was performed using the HiPerFect Transfection Reagent (Qiagen) according to the manufacturer’s instruction.
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3

Validation of miR-22 Target Genes

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3' UTRs of candidate target genes containing the binding site of miR-22 were respectively amplified by PCR and were cloned into the vector psiCHECK-2 (Promega, US). To obtain mutation of miR-22 complementary sites within the 3' UTR of HK2 and IL-6, the binding sites of miR-22 seed region in 3' UTRs were mutated following a mutagenesis protocol 29 (link) (The primers are shown in Table S4). The miR-22 mimics, miR-22 mimics control, miR-22 inhibitor, and miR-22 inhibitor control were designed and synthesized by Genepharma (Shanghai, CHN) (The sequences are shown in Table S3). For the luciferase reporter assay, IPEC-J2 cells were seeded in 24-well plate and then co-transfected with 100 ng plasmid and 100 nM of miR-22 mimics, or miR-22 inhibitor, or control, using Lipofectamine 3000 (Invitrogen, US) according to the manufacturer's instructions. At 48 h post transfection (hpt), the luciferase activities were measured using Dual-Glo Luciferase Assay System (Promega, US) following the manufacturer's manual.
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4

Knockdown of CTC-497E21.4 in Gastric Cancer

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CTC-497E21.4 short hairpin RNAs (shRNAs) (sh-CTC-497E21.4), pcDNA-CTC-497E21.4 and miR-22 inhibitor were purchased from GenePharma (GenePharma, Suzhou, China). Short interference RNA (siRNA) for NET1 (si-NET1) was designed by RiboBio (RiboBio, Guangzhou, China). The transfection was performed using Lipofectamine 3000 (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's instructions. At 48 h or 72 h post-transfection, GC cells were harvested for further study. The shRNA, siRNA and pcDNA sequences used in the transfection are listed in Supplementary Table S3.
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5

Innate Immune Pathway Modulation by miR-22

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Poly(I:C) was obtained from Sigma. Antibodies against IRF3 were obtained from Cell Signaling Technology. Antibodies against MAVS were purchased from Proteintech Technology. Antibodies against p65, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and LaminA were purchased from Abclonal Technology. Horseradish peroxidase–conjugated anti-mouse/rabbit secondary antibodies were from Boster. miR-22 mimics (double-stranded RNA oligonucleotides) and miR-22 inhibitors (single-stranded chemically modified oligonucleotides) from GenePharma were used for the overexpression and inhibition of miR-22 activity, respectively. Small interfering RNA (siRNA) oligonucleotide and control for MAVS were also purchased from GenePharma. Table 1 lists the sequences of the miR-22 mimics, miR-22 inhibitors, siMAVS oligonucleotides, and their controls.
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6

Investigating TGEV Infection Mechanisms

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Histone H3 monoclonal antibody, phospho-I-κB monoclonal antibody, and NF-κB p65 (L8F6) mouse monoclonal antibody were purchased from Cell Signaling Technology (US). β-actin monoclonal antibody was purchased from Santa Cruz (US). Horseradish peroxidase (HRP)-conjugated secondary antibody was purchased from Pierce (US). Dylight594-conjugated secondary antibody was purchased from Genshare Biological (China). IPEC-J2 cell line was kindly gifted by Dr. Zhanyong Wei (Henan Agricultural University, China). Cells were cultured in Dulbecco’s Modified Eagle Medium (DMEM)/F-12/HAM (Thermo Fisher Scientific, US) supplemented with 100 IU of penicillin and 100 mg of streptomycin per ml, at 37 °C in an incubator with 5% CO2. The TGEV Shaanxi strain was separated from TGEV-infected piglets [47 ]. miR-22 mimics, miRNA mimics control, miR-22 inhibitors, miRNA inhibitors control, siCirc009380, and negative control were synthesized by GenePharma (China) (The sequences were shown in Additional file 1: Table S8).
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