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4 protocols using label it mirna labeling kit

1

miRNA-132 Transfection in Cells

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The Cy-3-labelled Control miRNA was purchased from Life Technologies. miRNA-132 (Life Technologies) and αmiRNA-132 (Life Technologies) were labelled using Label IT miRNA Labeling Kit (Mirus) according to manufacturer’s protocol. Cells were transfected with Control miRNA (Life Technologies), miRNA-132 (Life Technologies) and αmiRNA-132 (Life Technologies). The miRNAs were transfected with siPORT NeoFX transfection reagent (Life Technologies) at a concentration of 50 nM and 1 × Opti-MEM I (Life Technologies). All transfections were completed according to the manufacturer’s protocols for 24 h.
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2

miRNA-132 Transfection Assay

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The Cy-3-labelled Control miRNA was purchased from Life Technologies. miRNA-132 (Life Technologies) and αmiRNA-132 (Life Technologies) were labelled using Label IT miRNA Labeling Kit (Mirus) according to manufacturer's protocol. Cells were transfected with Control miRNA (Life Technologies), miRNA-132 (Life Technologies) and αmiRNA-132 (Life Technologies). The miRNAs were transfected with siPORT NeoFX transfection reagent (Life Technologies) at a concentration of 50 nM and 1 × Opti-MEM I (Life Technologies). All transfections were completed according to the manufacturer's protocols for 24 h.
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3

Transfection Efficiency of Labeled miRNA

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NCmiR was labeled with Cy5 (Cy5NCmiR) using LabelIT miRNA labeling kit (Mirus Bio, Madison, WI, USA). Thereafter, NPX containing Cy5NCmiR (Cy5NCmiR:NPX-glue) or the pEGFP-C1 plasmid (pEGFP:NPX) were prepared as described above. To determine the transfection efficiency, Hep3B cells were plated at a density of 5×104 cells/well on a coverslip in a 24-well plate on day 0. On day 2, Cy5NCmiR:NPX-glue or pEGFP:NPX-glue was placed on a side of the well and the coverslip containing the seeded cells was placed on the well. On the days indicated in the figures, Cy5NCmiR or GFP expression in the cells was determined using confocal fluorescence microscopy (Zeiss LSM510 Meta Confocal Imaging System, Carl Zeiss, Thornwood, NY, USA) and FACSCalibur Flow Cytometry (BD Biosciences, San Jose, CA, USA) after detaching the cells. The transfection efficiency of NPX-glue was compared with that of G-fectin (Genolution, Seoul, Korea) for miRNA and Lipofectamine 2000 (Invitrogen, Waltham, MA, USA) for the plasmid. The cells were transfected with Cy5NCmiR (100 nmol) or pEGFP-C1 (0.5 μg) using G-fectin or Lipofectamine 2000, respectively, as per the manufacturer's suggestion.
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4

Placental miRNA Profiling Pipeline

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For total RNA extraction, 100mg of placental tissue were mechanically homogenized in TRIzol (Life Technologies, Foster City, CA), treated with DNase I (Ambion, Austin, USA) and enriched for small RNAs (siRNAs, miRNAs) using the mirVana microRNA Isolation kit (Ambion, Austin, USA). RNA quantity and purity were measured using a Nanodrop spectrophotometer (ND-1000, NanoDrop Technologies, Houston, TX, USA).
Labeling and hybridization were performed using the LabelIT miRNA labeling kit (Mirus Bio LLC, USA) according to the manufacturer's instructions. Samples were hybridized to an Applied MicroArrays (miRlink Bioarray 300054-3PK) platform containing 1211 human miRNAs (Applied Biosystems, Foster City, CA). This platform consists of 8 arrays per slide and on each array miRNAs are represented by multiple replicates.
Images were scanned using an Agilent Microarray Scanner (G2565CA).
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