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5 protocols using hfab rhodamine anti gapdh

1

Western Blot Analysis of Cell Lysates

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Protein was isolated from NIH 3T3 cells, MEFs or Embryos using Radioimmunoprecipitation assay buffer (RIPA buffer). Equal amount of protein from each genetic group was loaded in SDS-PAGE and transferred to PVDF membrane (Millipore). Membranes were blocked using 5% fat-free milk in TBS and incubated in primary antibody diluted in 5% fat-free milk-TBS containing 0.1% Tween-20: rabbit polyclonal E2F3 (Santa Cruz; sc-878, 1:2000), mouse monoclonal E2F3 (Millipore; 05–551, 1:2000), rabbit monoclonal MYC (Cell Signaling Technology; 2278, 1:1000), mouse monoclonal E2F8 (Santa Cruz; sc-514064, 1:500), mouse monoclonal E2F4 (Milli-pore; MABE160, 1:1000), hFAB Rhodamine anti-GAPDH (BIO-RAD; 12004168, 1:3000) and hFAB Rhodamine anti-β-Actin Primary Antibody (BIO-RAD; 12004164, 1:1000). The membranes were incubated in HRP-conjugated anti-rabbit (GE; NA934, 1:2000) or mouse (Jackson ImmunoResearch Laboratories; 115-035-174, 115-035-071, 1:2000) secondary antibodies and detected using BIO-RAD ChemiDoc Imaging Systems or X-ray film.
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2

CREM Protein Expression Analysis

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Cells treated with CREM siRNA or control siRNA were lysed in a radioimmunoprecipitation assay buffer supplemented with protease inhibitors. Samples were normalized for protein concentration, and equal amounts of material in the Laemmli sample buffer were subjected to SDS-PAGE and transferred to nitrocellulose filters. For immunoblotting, the mouse monoclonal anti-CREM antibody (clone 3B; Novusbio, Littleton, CO) and the rabbit monoclonal anti-EWSR1 antibody (ab133288; Abcam, Cambridge, UK) were incubated overnight in a cold room at 1∶1000 dilution in 5% BSA/TBS/Tween 0.1%. After that, the membrane was incubated for 1 hr at room temperature with a mix of goat anti-rabbit StarBright Blue 520 and goat anti-mouse StarBright Blue 700, and hFAB rhodamine anti-GAPDH (Bio-Rad, Hercules, CA, USA) antibodies at 1:1000 dilution. Equal protein loading was evaluated by the housekeeping protein glyceraldehyde-3-phosphate dehydrogenase (GAPDH). The membrane was washed 3× with TBST between incubations. Bound proteins were detected by fluorescence using ChemiDoc Gel Imaging System (Bio-Rad).
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3

Cardiac Protein Expression Analysis

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Cardiac tissue was cracked by RIPA and phosphatase inhibitor (Bimake, B15001) mixture to extract protein. Protein concentration was determined by BCA protein reagents (Thermo scientific, no. 23227). 20 μg of proteins were resolved on SDS-PAGE, transferred to a low-fluorescence PVDF membrane (Thermo scientific, no. 22860), and incubated with the following primary antibodies: anti-A2b (1 : 1000, GeneTex54903), antiphospholamban (PLB, 1 : 5000, Abcam2865), antiphospholamban phosphor S16 (P-PLB, 0.5 μg/ml, Abcam15000), antiryanodine receptor 2 (RyR 2, 1 : 5000, Abcam2861), NCX1 (1 : 1000, Abcam177952), SERCA2a (1 : 1000, Abcam2861), troponin C (1 : 4000, Abcam137130), and troponin I (1 : 2000, Abcam10231). All of the membranes were incubated at 4°C overnight. After incubation with fluorescent secondary antibodies (1 : 15000, Licor, IRDye® 800CW, IRDye® 680RD) for 1 h at room temperature, the membrane was washed 3 times and incubated with the housekeeping protein HFAB™ Rhodamine anti-GAPDH (1 : 1000, Bio-rad 12004167) for 1 h at room temperature. Images were taken with a Typhoon FLA9500 (GE Healthcare) and analyzed by using ImageQuant TL software.
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4

Quantification of Thermogenic Genes and Proteins

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mRNA was isolated with the Direct-zol RNA kit (Zymo Research, Irvine, USA) and up to 1 μg of total RNA was transcribed into cDNA using SuperScript II Reverse Transcriptase (Thermo Fisher Scientific). Relative expression of target genes was analyzed by quantitative real-time PCR using the ssoAdvanced Universal SYBR Green Supermix on a CFX Real Time PCR Detection System (BioRad) using specific primers (sequences are given in Table S3). Expression values were calculated using the ddCt method with hypoxanthine-guanine phosphoribosyl transferase (HPRT) as a reference gene.
Cellular protein was extracted and protein expression analyzed by Western blot analysis as described before [23 (link)]. The following antibodies were used: mouse anti-UCP1 (R&D Systems, MAB6158), rabbit anti-PPARγ (Cell Signaling Technologies, #2443), rabbit anti-TGFβ1 (abcam, ab179696), mouse anti-TGFβ2 (abcam, ab36495), mouse anti-OXPHOS antibody cocktail (abcam, ab110411), hFAB Rhodamine anti-GAPDH (BioRad, #12004168), and hFAB Rhodamine anti-α-tubulin (BioRad, #12004165).
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5

Western Blot Antibody Validation Protocol

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Western Blot was performed as described previously [6 (link)]. Following antibodies were used: anti-NPR3 (EPR12716, Abcam, Berlin, Germany), anti-pAKT (Ser473; #9271, Cell Signaling, Frankfurt, Germany), anti-AKT (#9272, Cell Signaling), anti-adiponectin (#GTX112777, GeneTex, Taiwan), anti-IRAK1 (SC-5287, Santa Cruz, Heidelberg, Germany), anti-IRAK1 (#4504, Cell Signaling), anti-TRAF6 (PA29622, Invitrogen, Carlsbad, USA), anti-α-tubulin (DM1A, Merck, Darmstadt, Germany), anti-β-actin (AC-15, Sigma-Aldrich), anti-GAPDH (6C5, HyTest, Turku, Finland), hFAB rhodamine anti-GAPDH, anti-tubulin, and anti-actin (#12004168, #12004166, #12004164, BioRad, Feldkirchen, Germany).
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