The largest database of trusted experimental protocols

3 protocols using shandon cryotome e cryostat

1

Quantifying Microglia and Vascular Changes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following seven days upon the treatment, mice were weighed and deeply anesthetized with a ketamine/xylazine cocktail accordingly. Animals were transcardially perfused once with ice-cold PBS 1x (Gibco) and then with 4% paraformaldehyde (PFA). Brains were collected in 4% PFA for an additional 24 h post-fixation and incubated in 20% sucrose for another 24 h.
For immunofluorescence assay, brains were embedded in Tissue-Tek® optimal cutting temperature compound (Sakura), cut into 10 μm sections of thickness using a Shandon Cryotome E cryostat (Thermo Scientific), and mounted on Starfrost® adhesive slides (Knittel Glass). Sections were rehydrated with blocking buffer (10% BSA, 0.3% Triton in TBS), rinsed with TBS (Gibco), and incubated overnight at 4°C with the corresponding dilutions of the antibodies CD45 (BioLegend, clone 30-F11) and CD31 (Santa Cruz, clone M-20) in blocking buffer. After several rinses, sections were incubated with Alexa Fluor 488 (Molecular Probes) or Alexa Fluor 546 (Molecular Probes) antibodies and counterstained with DAPI. Slides were analyzed under a FV1000 laser scanning confocal fluorescence microscope (Olympus). Quantification of microglia numbers and CD45 integrated density area was performed using ImageJ software (NIH, USA).
+ Open protocol
+ Expand
2

Microglia and Endothelial Cell Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Following seven days upon the treatment, mice were weighed and deeply anesthetized with a ketamine/xylazine cocktail accordingly. Animals were transcardially perfused once with ice-cold PBS 1x (Gibco) and then with 4% paraformaldehyde (PFA). Brains were collected in 4% PFA for an additional 24 h postfixation and incubated in 20% sucrose for another 24 h.
For immunofluorescence assay, brains were embedded in Tissue-Tek ® optimal cutting temperature compound (Sakura), cut into 10 μm sections of thickness using a Shandon Cryotome E cryostat (Thermo Scientific), and mounted on Starfrost ® adhesive slides (Knittel Glass). Sections were rehydrated with blocking buffer (10% BSA, 0.3% Triton in TBS), rinsed with TBS (Gibco), and incubated overnight at 4°C with the corresponding dilutions of the antibodies CD45 (BioLegend, clone 30-F11) and CD31 (Santa Cruz, clone M-20) in blocking buffer. After several rinses, sections were incubated with Alexa Fluor 488 (Molecular Probes) or Alexa Fluor 546 (Molecular Probes) antibodies and counterstained with DAPI. Slides were analyzed under a FV1000 laser scanning confocal fluorescence microscope (Olympus). Quantification of microglia numbers and CD45 integrated density area was performed using ImageJ software (NIH, USA).
+ Open protocol
+ Expand
3

Histological Analysis of ELR Hydrogels

Check if the same lab product or an alternative is used in the 5 most similar protocols
After 1, 3, and 6 weeks, ELR hydrogels and 3D models (coaxial binary tubular scaffolds) were extracted from the incision site, placed in a plastic mold and covered with optimum cutting temperature (OCT) mounting medium (VWR). Then, samples were frozen by immersion in liquid nitrogen-cooled 2-methylbutane (Sigma Aldrich) and subsequently stored at -80 °C until further processing. Once all the samples were collected, they were cut into 6-µm thick sections at -20 °C in a cryostat (Shandon Cryotome E Cryostat, Thermo scientific).
Sample sections were stained with hematoxylin and eosin solutions (Sigma Aldrich), as previously described [40] , and images were obtained with a bright-field optical microscope (Nikon Eclipse 80i) equipped with a color camera (Nikon Digital Sight DS-Fi1), using the NIS-Elements AR software (Nikon Corporation).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!