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5 protocols using sybr green premix pro taq hs qpcr kit

1

Gene Expression Analysis of Immunological Markers

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Total RNA was extracted from the total cellular, nuclei, cytoplasmic, and ribosomal fractions using AG RNAex Pro Reagent (AG21102). RNA was reverse-transcribed using Evo M-MLV RT Premix for qPCR (AG11706), and cDNA was used for quantitative real-time PCR with SYBR Green Premix Pro Taq HS qPCR Kit (AG11701) on a StepOne Real-Time PCR System (Applied Biosystems, Foster City, CA, USA) to determine the expression levels of mouse H2-Aa, Malat1, and U6. The products used above were purchased from Accurate Biotechnology (Hunan) Co., Ltd. (Changsha, China) and all procedures were performed according to the manufacturer’s protocol. The data were normalized to Actb expression levels. The primers used are listed above.
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2

Quantitative Analysis of UBA6 and UBA6-AS1 Expression

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Total RNA was extracted from tissues and cells using the TRIzol Reagent (Invitrogen). 1 μg of total RNA was reverse transcribed using an Evo M-MLV RT Kit with gDNA Clean for qPCR (Accurate Biology). qRT-PCR was performed using a SYBR® Green Premix Pro Taq HS qPCR Kit and the StepOne Plus system (Applied Biosystems). GAPDH was used as the internal control gene. The relative expression levels of indicated genes were calculated using 2−ΔΔCT method. The primer sequences were listed: UBA6-AS1-F: CCGGCTTCTTTACCACTTCTT, UBA6-AS1-R: GGCTGCATTCCTGAGAGATTAG; UBA6-F: TTGGTCCCAGTGTGTAGAATTAG, UBA6-R: AATCGTATGTCCAGAGGGAAAC.
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3

qRT-PCR Analysis of miRNA Expression

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qRT-PCR was conducted using an SYBR Green Premix Pro Taq HS qPCR Kit (Thermo Fisher Scientific, Waltham, MA, USA). The total RNA was extracted from the roots, stems, leaves, and cotyledons of the flowers using a TaKaRa Mini BEST Plant RNA Extraction Kit, and reverse transcription of the microRNAs (miRNAs) was performed using Mir-X miRNA First-Strand Synthesis (Takara Bio, Dalian, China). The reverse-transcribed cDNA was used as a template and normalized with the internal reference 5.8s rRNA. The primer sequences were designed using Primer 5.0 software (Table 4) and synthesized using Sangon Bioengineering Co., LTD (Shanghai, China).
GraphPad Prism 5 (San Jose, CA, USA) was used for the data of the qRT-PCR. The 2-∆∆CT method was used to calculate the relative expression level. After a correction using one-way ANOVA analysis, the data was analyzed using the Newman–Keuls method. A p-value < 0.05 meant a significant difference. Ahactin11 was used as the internal reference gene to calculate the relative expression level. The expression level of the CK was taken as “1”, and that of the treated sample was calculated and plotted. Each result is the mean ± standard deviation of 3 repetitions.
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4

Quantitative RT-PCR Analysis of Macrophage Genes

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Total RNAs were isolated from KCs using TRIzol reagents (Invitrogen, USA). Complementary DNA synthesis was performed using 1 µg total RNA via HiScriptII 1st Strand cDNA Synthesis Kit or miRNA 1st Strand cDNA Synthesis Kit (Vazyme, China). qRT-PCR was carried out using SYBR Green Premix Pro Taq HS qPCR Kit on ABI 7500 Thermal Cycler (Thermo, USA) with the following steps: 95 ℃ for 5 min and 40 cycles of 95 ℃ for 10 s, 60 ℃ for 30 s. The relative expression level was normalized to U6 small nuclear RNA (snRNA) or GAPDH using the 2−ΔΔCt formula. The details of primers used for qRT-PCR are summarized in Table 1. Statistical analysis data were taken from three independent experiments.

Primers for qRT-PCR

PrimerSequence(5ʹ-3ʹ)
miR-374b-5pGCGCGATATAATACAACCTGC
Universal reverse primerGCTGTCAACGATACGCTACG
C/EBP β forward primerGCTGAGCGACGAGTACAAGATGC
C/EBP-β reverse primerCTTGTGCTGCGTCTCCAGGTTG
IL6 forward primerCTTCTTGGGACTGATGCTGGTGAC
IL6 reverse primerTCTGTTGGGAGTGGTATCCTCTGTG
iNOS forward primerCCTAGTCAACTGCAAGAGAA
iNOS reverse primerTTTCAGGTCACTTTGGTAGG
TNFα forward primerCGCTCTTCTGTCTACTGAACTTCGG
TNFα reverse primerGTGGTTTGTGAGTGTGAGGGTCTG
Arg1 forward primerAGACAGCAGAGGAGGTGAAGAGTAC
Arg1 reverse primerAAGGTAGTCAGTCCCTGGCTTATGG
GAPDH forward primerCCACTCACGGCAAATTCAAC
GAPDH reverse primerCTCCACGACATACTCAGCAC
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5

Duodenal Gene Expression Analysis

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The expression of Claudin-1, ZO-1, TNF-α, IL-22, IL-6, IL-1β, CAT, Nrf2, HO-1, and NQO1 in duodenal tissues was assessed using the real-time quantitative (qPCR) method. Duodenal tissues were mixed with RNAiso Plus, homogenized, and total RNA was extracted. The primer sequences are shown in Supplementary Table S1. The removal of genomic DNA was performed using 5× gDNA Clean Buffer and RNase-free water. Subsequently, reverse transcription was carried out using Evo M-MLV RT Premix according to the manufacturer’s instructions for qPCR. Subsequently, reverse transcription was carried out using Evo M-MLV Mix kit with gDNA Clean for qPCR Premix according to the instructions. The SYBR@ Green Premix Pro Taq HS qPCR Kit AG11701 was mixed with cDNA, and the reaction was carried out using the Real-Time PCR System (Thermo Fisher Scientific, Waltham, MA, USA) with 1 cycle of the pre-denaturation reaction: 95 °C for 30 s and 40 cycles of the polymerase chain reaction. The mRNA expression levels of target genes were calculated using the 2−ΔΔCT method. Each group detected 6 values for each indicator, and the final average was taken as the indicator detection result.
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