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Stata release 13

Manufactured by StataCorp
Sourced in United States

Stata release 13 is a statistical software package developed by StataCorp. It provides a range of tools for data analysis, modeling, and visualization. Stata 13 offers features for handling and manipulating data, performing various statistical analyses, and generating reports.

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55 protocols using stata release 13

1

Epidemiology of Bronchiectasis in NHANES

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All statistical analyses were performed using NHANES weights and survey (svy) commands in STATA (release 13.1; StataCorp LP, College Station, TX, USA) to account for the complex multistage probability sampling design. The prevalence and 95% confidence interval (CI) for each variable were calculated for both groups. Intergroup comparisons of continuous variables and categorical variables between the two groups were performed using t-test and chi-squared test, respectively. To evaluate factors associated with bronchiectasis, both univariable and multivariable logistic regression analyses were performed. Model 1 was adjusted for age, sex, BMI, and factors with P values <0.2 in univariable analysis. Model 2 was additionally adjusted for presence of airflow limitation. Subjects with missing values in the pulmonary function test were not included in Model 2. Two-tailed analyses were conducted, and P values <0.05 were considered significant.
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2

Normalizing Biofilm Data on Tiles

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The analyzed data of the biofilms were expressed per area of the tile (i.e., per cm2). Since there is a possibility of obtaining biased information regarding biofilm formation on the tile, we compared the weights of two different subsamples for the bacterial DNA extraction, followed by chemical analysis, and reconfirmed that they genuinely were of the same weight. We used the following equation to normalize the data: corrected data (U/cm2) = [raw data (U)/factor]/area of the tile (100 cm2), where “factor” = weight of the subsample (g)/total biofilm weight on the tile (g).
Chemical parameters between the positive and negative sites were compared using Student’s t tests. The significance level was set at P < 0.05. To determine the beta diversity of the microbiota among samples, principal-component analysis (PCA) was applied to the bacterial composition of the OTU data sets of all (i.e., stream flow and biofilm) samples. All statistical treatments were performed using the STATA release 13.1 package (version 13.1; Stata Corp., College Station, TX, USA).
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3

Diagnostic Accuracy of Cognitive Tests

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Means and standard deviations or numbers and proportions were used for descriptive statistics. We compared categorical data with the chi-squared test and continuous data with the t-test. To test inter-rater reliability, two residents of the Memory Clinic independently administered the PMR to a consecutive sample of patients (n = 42) after the retrospective study.
To test diagnostic accuracy of SST and PMR, we calculated the sensitivity, specificity and likelihood ratios (LR), Receiver Operating Characteristic (ROC), and the area under the ROC curve (AUC). In the first model, either SST or PMR had to be abnormal to detect dementia. In the second model, both SST and PMR had to be abnormal to detect dementia. To adjust for the fact that patients with dementia were significantly older, we stratified them into two groups: younger and older patients.
We used STATA release 13.1 (Stata Corp, College Station, TX, USA), and considered a p-value of 0.05 to be statistically significant.
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4

Evaluating Oral Health-Related Quality of Life

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We considered four out of the five items as sufficient to characterize a subject’s OHRQoL level. Therefore, two subjects were excluded from the analysis because the number of missing OHIP items precluded the calculation of an informative summary score. If one item was missing, we imputed it using median imputation. For OHIP5 item no.2 (Painful aching), 2 subjects; item no. 3 (Uncomfortable about appearance), 3 subjects; item no. 4 (Less flavor in your food), 2 subjects; item no. 5 (Difficulty doing your usual jobs), 17 subjects were missing. Overall, 24 subjects were missing OHIP5 items information.
Except for the latent variable analyses, all computations were performed using the statistical software package STATA Release13.1[29 ], with the probability of a type I error set at the 0.05 level. CFA and SEM analyses were performed in R[30 ] using the lavaan package[31 ].
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5

Longitudinal Assessment of Therapy Outcomes

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We used means and standard deviations, or numbers and proportions, for descriptive statistics. We calculated means and 95 % confidence intervals of pre- and post-assessments for each of the four domains, and then compared them, using linear regression with robust standard errors, so we could account for the possibility some patients were included in both phases of the assessment. We then created multivariable models to control for the potential influence of confounders by simultaneously including the following variables in the model: age, sex, GP assignment, and, duration of assignment. We used STATA release 13.1 for all analyses (Stata Corp, College Station, TX, USA). A p-value of <0.05 was considered statistical significant.
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6

Evaluating Physician Estimates of Stroke Risk

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We compared baseline characteristics (age, sex) using Chi-square or Fisher's exact test for categorical data, and differences in estimation of stroke risk using t-test for continuous data. We analysed GP data separately, and stratified by confidence in risk estimates, experience with TIA, and age of the physician. We dichotomized co-variables and omitted underestimates of risk so we could understand the possible confounding mechanism in overestimated risk assessments. To compare the third risk estimate (carotid endarterectomy) with the other two, we collapsed both overestimated risk reductions (40% and 50%) into one category. We calculated p-value using Chi-square test and Spearman's rho for risk estimation as the independent variable. Each of the other co-variables (experience, age, self-confidence) was used as the dependent variable to detect correlation. Finally, we performed a logistic regression analysis to assess predictors of immediate emergency referral by GPs in cases of suspected TIA. We considered a p-value of 0.05 to be statistically significant. All analysis was done with STATA release 13.1 (Stata Corp, College Station, TX, USA).
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7

Corneal Characteristics Longitudinal Analysis

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For visual acuity, manifest refraction spherical equivalent (MRSE), Kmax, Kmean, corneal astigmatism, Q-value, thinnest pachymetry, HOA, topographic indices (ISV, IVA, IHA, IHD, KI, CKI and Rmin) and corneal densitometry, multilevel data analysis (mixed linear model) were used to compare the difference of these values between each visit. Statistical analyses were performed with STATA®, Release 13.1 (StataCorp, 2013. College Station, TX, USA). Statistically significant change was considered when p value was less than 0.05.
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8

Meta-Analysis of Genetic Associations

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To make the data suitable for MR, we converted odds ratios (ORs) to log ORs and inferred SEs from reported 95% confidence intervals (CIs) or (if the latter were unavailable) from the reported p value using the Z distribution. For binary traits, the beta corresponded to the log OR per copy of the effect allele. For quantitative traits, the beta corresponded to the SD change in the trait per copy of the effect allele.
p values were two sided, and evidence of association was declared at p < 0.05. Where indicated, Bonferroni corrections were used to make allowance for multiple testing, although this is likely to be overly conservative given the non-independence of many of the outcomes tested. All analyses were performed in R 3.2.4 (http://www.r-project.org), and Stata release 13.1 (StataCorp LP, Texas City, USA).
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9

Factors Affecting Artery Diameter Changes

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We used univariate and multivariate mixed-effects regression to test the effect of various factors on the pre-procedural artery diameter and the post-procedural changes in artery diameter. Differences in the proportions between groups were tested by Fisher’s exact test. Differences in continuous variables between groups were tested by the Kruskal-Wallis and Wilcoxon tests. All statistical analyses were performed with Stata release 13.1 (StataCorp LP, College Station, TX, USA). A p-value <0.05 was considered significant.
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10

Depression Prevalence and Risk Factors

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Data were managed and analyzed with the statistical package Stata release 13.1 (StataCorp, College Station, TX). We used descriptive statistics (mean, standard deviation of the mean [SD], proportions) to summarize the data, and Pearson's chi-square statistic (χ2) to compare the distribution of various measured factors according to participants' depression status. We used Cronbach's alpha to evaluate the internal consistency (reliability) of the KICA-dep, and two by two tables to estimate sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV) associated with different cut-points of the scale. We generated a receiver operating characteristic (ROC) curve using the ‘roctab’ command of Stata, which allowed us to estimate the area under the ROC curve. We estimated the point-prevalence of depression by dividing the number of people with a depressive disorder by the total number of people in the sample, and calculated the 95% confidence interval (95%CI) of the prevalence estimate using generalized linear modeling (glm). The odds ratios (OR) of depression and respective 95%CI associated with relevant exposures were calculated using logistic regression. Alpha was set at 5% and all probability tests reported were two-tailed.
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