The largest database of trusted experimental protocols

6 protocols using cytarabine

1

Isolation and Culture of Murine Dorsal Root Ganglia

Check if the same lab product or an alternative is used in the 5 most similar protocols
Five juvenile BALB/c mice (1‐3 days old) were individually sacrificed in 75% ethanol at −20°C. The DRGs were extracted and placed in Dulbecco's modified Eagle's medium DMEM/F12 culture medium cooled on ice. The DRGs were completely shredded and digested with 0.25% trypsin and 0.1% type‐4 collagenase. followed by mixing and incubation at 37°C in a humidified atmosphere comprising 5% CO2 for 30 minutes to dissolve the tissue and release single cells. The process was assessed every 5 minutes, with gentle shaking to improve the mixing of the tissue pieces and the digestion solution. A fivefold volume of DMEM/F12 medium with 20% FBS was added to the centrifuge tube and allowed to equilibrate for 5 minutes without agitation to stop the digestion. Then, the cells were centrifuged at 300 × g for 5 minutes and resuspended in neurobasal serum‐free medium with B27 and 1% penicillin/streptomycin solution added. The cells were plated in 6‐well plates at 1 × 104. After 24 hours, the medium was exchanged again, and a solution comprising 5 µmol/L cytarabine (MedChemExpress, Monmouth Junction, NJ), B27, 1% penicillin/streptomycin solution, and Neurobasal serum‐free medium was added. This medium was exchanged for normal culture medium after another 48 h.
+ Open protocol
+ Expand
2

Cytarabine and NRTI Antiviral Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Rilpivirine, etravirine, and cytarabine were purchased from MedChem Express (Monmouth Junction, NJ, USA) or Targetmol (Boston, MA, USA). All purchased drugs had reported purity of ≥95% from the commercial suppliers. Resazurin and dimethyl sulfoxide (DMSO) were purchased from Sigma-Aldrich (Castle Hill, NSW, Australia). All drug solutions were prepared as 10 mM stocks with 100% DMSO and stored at −20 °C.
+ Open protocol
+ Expand
3

Preparation and Handling of Chemical Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
PLX51107 was kindly provided by Plexxikon or purchased from MedChemExpress. Dinaciclib, cytarabine, etoposide, IWR-1, BML-284, and CHIR-99,021 (laduviglusib) were obtained from MedChemExpress. All chemical compounds were dissolved in Dimethyl Sulfoxide (DMSO) to prepare a 10 mM stock solution and were stored at -80 C for long-term storage as recommended.
+ Open protocol
+ Expand
4

Compound Preparation for Molecular Studies

Check if the same lab product or an alternative is used in the 5 most similar protocols
SNDX-5613, SNDX-50469, ziftomenib (KO-539), ATRA, SY-1425, Cytarabine, Daunorubicin, Selinexor (KPT-330), Entinostat, Panobinostat, and Adavosertib were obtained from MedChem Express (Monmouth Junction, NJ). Cycloheximide was obtained from Santa Cruz Biotechnology, Inc. (Dallas, TX). All compounds were prepared as 10 mM stocks in 100% DMSO and frozen at −80 °C in 5–10 µL aliquots to allow for single use, thus avoiding multiple freeze-thaw cycles that could result in compound decomposition and loss of activity. For in vivo studies, SNDX-5613 was obtained from Syndax Pharmaceuticals under an MTA and reconstituted per the manufacturer’s instructions.
+ Open protocol
+ Expand
5

Apoptosis Induction Pathway Modulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Artesunate, MG132, EB, and AO were purchased from Sigma-Aldrich Inc. Venetoclax (ABT-199) was purchased from Selleck Chemical. Cytarabine and Q-VD-OPh were purchased from MedChemExpress. Antibodies to PARP and caspase-8 were obtained from BD Biosciences. Antibodies to Bcl-2 (C-2), Actin (C-2), Mcl-1 (S-19), Mcl-1 (G-7), Bax (6A7) and Chk1 (G-4) were obtained from Santa Cruz Biotechnology, Inc. Antibodies to Mcl-1 (D35A5), Bim (C34C5), Bak (D4E4), Bax poly, Noxa (D8L7U), Cleaved Caspase-3 (Asp175), Phospho-Chk1 (Ser345) (133D3), and Phospho-Histone H2A.X (Ser139) (20E3) were obtained from Cell Signaling Technology, Inc. Antibodies to Noxa were obtained from Abcam, Inc. Bak (Ab-1) was obtained from Merck Millipore. NOXA(sc-37305), BIM(sc-29802), MCL1(sc-35877)siRNA, and a control siRNA were purchased from Santa Cruz Biotechnology, Inc. NOXA(s10708), BIM(s195011), MCL1(s8583)siRNA was purchased from Thermo Fisher Scientific.
+ Open protocol
+ Expand
6

Optimized Serum-Free Cell Culture

Check if the same lab product or an alternative is used in the 5 most similar protocols
Synthetic models were maintained in optimized serum-free media. Navitoclax (ABT-263), venetoclax (ABT-199), DT2216, cytarabine and staurosporine were purchased from MedChemExpress (Monmouth Junction, NJ). Media composition, dose response curves, and functional assays are described in supplemental Methods.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!