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23 protocols using apc anti mouse cd11c

1

Anti-TLR9 Monoclonal Antibody Purification

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Anti-TLR9 mAbs, NaR9, J15A7, B33A4 and C34A1, were purified from ascitic fluid as shown previously12 (link). Streptavidin-PE, anti-mouse IgG1-PE, anti-mouse IgG2a-PE, isotype control antibodies (mouse IgG1, mouse IgG2a), anti-mouse CD16/32, anti-mouse CD19-APC-Cy7, anti-mouse CD11b-APC, anti-mouse CD11c-APC, anti-mouse CD11c-PE-Cy7, anti-mouse Siglec-H-FITC and anti-mouse Ly-6G-PerCP-Cy5.5 were purchased from BioLegend (San Diego, CA, USA). Anti-mouse B220-APC was purchased from TONBO biosciences (San Diego, CA, USA). J15A7-PE, anti-mouse CD49b-BV421 and anti-mouse CD11b-BV510 were purchased from BD Biosciences (Franklin Lakes, NJ, USA). Anti-Calnexin and anti-LAMP1 were purchased from Abcam. Anti-LAMP2 was purchased from eBiosciences (San Diego, CA, USA). CpGA 1585 (5′-G*G*GGTCAACGTTGAG*G*G*G*G*G-3′, asterisks indicate phosphorothioated residues), PolyU (5′-UUUUUUUUU UUUUUUUUUU-3′, whole phosphorothioated) and CpGB 1688 (5′-TCCATGACGTTCCTGATGCT-3′, whole phosphorothioated) were synthesized by FASMAC (Atsugi, Japan). Loxoribine (7-allyl-7,8-dihydro8-oxo-guanosine) was purchased from Enzo Life Science (Farmingdale, NY, USA). Saponin and D-(+)-galactosamine were purchased from Sigma-Aldrich (St. Louis, MO, USA). FuGene6 and DOTAP were purchased from Roche Applied Science (Basel, Switzerland).
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2

Lung Cell Populations Analysis After SiO2-FITC Exposure

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On day 53, single cell suspensions were generated from lungs of NS and S mice exposed to SiO2-FITC or to corresponding SUP (n=5–7), dissociated with a lung dissociation kit (kit number 130-065-927; Miltenyi Biotec GmbH, Bergisch Gladbach, Germany), and analyzed by flow cytometry, monitoring the FITC conjugate. Untreated mice were used as negative controls. To investigate the interaction of SiO2-FITC with different lung cell populations, cells were stained and gated as described previously.24 anti-mouse CD45 PE-Cyanine7, 7AAD, and anti-mouse F4/80 PE were obtained from eBioscience (San Diego, CA, USA), anti-mouse CD11b APC-Cy™7 from BD Biosciences (San Jose, CA, USA), anti-mouse CD11c APC from BioLegend (San Diego, CA, USA), and GR1 (LY6C/G) Pacific Orange™ from Invitrogen (Life Technologies, Carlsbad, CA, USA). Samples were measured in a BD FACSCanto II flow cytometer and data were analyzed using a FlowJo graphics application V9.7.2 (TreeStar Inc., Ashland, OR, USA).
Interstitial macrophages were defined as CD45+, Gr-1Low, F4/80+, CD11b+ but CD11c; alveolar macrophages as CD45+, Gr-1Low, F4/80+, CD11c+ but CD11b; neutrophils as CD45+, Gr-1High, and CD11b+; and lymphocytes as CD45+, but CD11b and SSCLow.
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3

Comprehensive Immune Cell Profiling in BALF and Lung Tissues

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To detect the activation of the Jurkat cell line, we used anti-human CD69 PE (BioLegend). To analyze the phenotype of mouse eosinophils in BALF or lung tissues, we used anti-mouse CD45 PE-CY7 (BioLegend), anti-mouse SiglecF PE (BD), anti-mouse F4/80 APC-CY7 (BioLegend), anti-mouse CD11b FITC (BioLegend) and anti-mouse CD11c APC (BioLegend). To detect mIL-5Rα positive cells, we used anti-mouse CD125 AF488 (BD). To detect mIL-5-anchored CCAR and hIL-5-anchored CCAR, we used anti-mouse/human IL-5 PE (BioLegend) or anti-HA.11 Epitope Tag AF647 (BioLegend). To detect anti-hIL-5Rα CAR, hCCL11-anchored CCAR, and hCCL24-anchored CCAR, we used anti-HA.11 Epitope Tag AF647 (BioLegend).
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4

Characterization of Immune Cell Activation

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In order to examine activation status of the cells, BMDCs were treated with Duolac ATP or LPS for 24 h at 37°C. The cells were stained with anti-mouse CD86-FITC, PD-L1-PE, MHC II-PE-cy7, CD11c-APC (all from BD Biosciences) for 20 min at 4°C in the dark. To test the increase of Treg, CTV labeled CD4+ T cells cultured with Duolac-treated BMDCs for 3 days were stained with anti-mouse CD4-PE (BD Biosciences). After surface staining, CD4+ T cells were fixed and stained with anti-mouse Foxp3-APC mAb (BioLegend, Dedham, MA, United States) using FOXP3 Fix/Perm Buffer Set (BioLegend). In vivo examination, single cells from mLNs and PP were isolated from AD mice. Population changes of DCs and Tregs were examined as aforementioned. To analyze for subpopulation of Th cells, total mLN and PP cells were stimulated with PMA and ionomycin (Sigma-Aldrich) in the presence of brefeldin A for 4 h. After the stimulation, the cells were stained with appropriate combination of anti-mouse CD11c-APC, CD4-bv605, Foxp3-APC, IFN-gamma-PE, IL-4-bv605, and IL-17-APC-cy7 mAb (all from Biolegend). The cells were washed and the expression was examined using a FACSCanto II (BD Biosciences). All flow cytometric data acquired were analyzed with FlowJo software (Tree Star, Ashland, OR, United States).
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5

Leukocyte Transmigration Assay

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Inserts from 24-well transwell plates (Costar, Sigma-Aldrich) were coated with collagen type 1 (Advanced Biomatrix) and fibronectin (Merck Millipore) (10 μg/ml each) and seeded with 175'000 imLECs in imLEC medium on the lower side or on the upper side of the transwell membrane, in analogy to the setup originally described by Johnson et al. (52 (link)). The medium was exchanged after 6 h and again the next day. Two days later, 1 × 105 LPS-activated BM-DCs (WT or ALCAM−/−) were added to the top well and left to migrate toward the bottom well containing 100 ng/ml of CCL21 (PeproTech) in DMEM/F12 medium containing 2% FCS. After 4 h, transmigrated DCs were stained with anti-mouse CD11c-APC (BioLegend) and quantified by FACS. For assessing antibody efficacy, WT DCs and LECs were both pre-incubated with I/F8-Fc or KSF-Fc (10 μg/ml) for 30 min at 37°C prior to performing the experiment in presence of antibodies.
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6

Comprehensive Multicolor Immune Profiling

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Anti-PD-L1 (ab213480, Abcam), anti-GAPDH antibody (2118, CST), anti-Phospho-TBK1/NAK antibody (5483, CST), HRP-conjugated secondary antibodies (7074, CST), anti-PD-L1(BE0101, BioXcell), anti-mouse CD16/32 antibody (553,141, BD Pharmingen), Fixable Viability Stain (565,388, BD Pharmingen), anti-CD80-BV421(562,611, BD Pharmingen), anti-CD86-PE-Cy7(560,582, BD Pharmingen), anti-mouse PD-1-PE (135,206, BioLegend), anti-mouse LAG3-PE-Cy7 (125,226, BioLegend), anti-mouse TIM3-BV421 (119,723, BioLegend), anti-mouse FOXP3-BV421 (126,419, BioLegend), anti-mouse Ki67-PE-CY7 (652,426, BioLegend), anti-mouse PD-L1-PE (124,308, BioLegend), anti-mouse CD11b-FITC (101,206, BioLegend), anti-mouse Ly6G-PE (551,461, BD Pharmingen), anti-mouse Ly6C-PE-Cy7 (128,018, BioLegend), anti-mouse F4/80-BV421 (123,132, BioLegend), anti-mouse CD206-APC (141,708, BioLegend), anti-mouse TNFα-PE (554,419, BD Pharmingen), anti-mouse CD3-BV605 (100,237, BioLegend), anti-mouse CD11C-APC (117,310, BioLegend), anti-mouse MHC-II-BV421 (107,632, BioLegend), anti-mouse NK1.1-PE-Cy7 (552,878, BD Pharmingen), anti-mouse CD80-PE (552,769, BD Pharmingen).
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7

BMSC-Derived Macrophage Phenotyping via FACS

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The expression of CD11b, CD206, CD11c, and F4/80 in BMSC-derived macrophages were analyzed using the FACS Calibur (Becton Dickinson, United States) and the CellQuest software (Becton Dickinson). The adherent cells were washed with PBS and collected using Accutase (Nacalai Tesque, Kyoto, Japan) and resuspended in 50 μL staining buffer (BD Pharmingen, Franklin Lakes, NJ, United States). The harvested cells were blocked with 2 μL Human Trustain FcX (Fc receptor Blocking Solution; BioLegend) for 10 min at room temperature, and stained with 2 μL antibodies in the dark for 30 min at 4°C. FITC anti- mouse CD11b, FITC anti-human CD11b, Alexa Fluor®488 anti-human CD11b, BV421 anti-mouse CD206, PE anti-mouse F4/80 and APC anti-mouse CD11c (BioLegend).
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8

Pulmonary Immune Cell Phenotyping

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At 7 dpi, pulmonary single-cell suspension was obtained and labeled using the method described above but with the following labeling antibodies: APC anti-mouse CD11c, FITC anti-mouse MHC Class II, PE anti-mouse NKp46, PE/Cy7 anti-mouse CD19, PerCP/Cy5.5 anti-mouse CD3ε, PE anti-mouse F4/80, PE/Cy7 anti-mouse Ly-6G, PerCP/Cy5.5 anti-mouse Siglec H (all from BioLegend, USA), FITC anti-mouse CD4 and PE anti-mouse CD8a (both from eBioscience).
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9

Multicolor Immunofluorescence Staining Protocol

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Chicken anti-GFP antibody (Abcam, ab13970, 1:500), Rabbit anti-Prospc (Millipore, ab3786, 1:500), Rat anti-Ki67 (ebioscience, 14-5698-82, 1:200), Rat anti-F4/80 (BioRad, MCA497GA, 1:200), APC anti-mouse CD326 (BioLegend, catalog#118214), PE/Cyanine7 anti-mouse CD45 (BioLegend, catalog#103114), PE/Cyanine7 anti-mouse CD31 (BioLegend, catalog#102418), PE anti-mouse F4/80 (BioLegend, catalog#123110), APC anti-mouse CD11c (BioLegend, catalog#117310), PerCP-Cyanine5.5 anti-human/mouse CD11b (Tonbo, catalog#65-0112), PE anti-mouse FOXP3 (BD biosciences, catalog#560408), APC anti-mouse CD4 (BD biosciences, catalog#553051), FITC Mouse IgG1 isotype control (BD biosciences, catalog#555748), PE Mouse IgG1 isotype control (BD biosciences, catalog#555749), APC Mouse IgG1 isotype control (BD biosciences, catalog#555751), FITC anti-human CD90 (BD biosciences, catalog#555595), PE anti-human CD73 (BD biosciences, catalog#550257), APC anti-human CD105 (BD biosciences, catalog#562408), FITC anti-human CD45 (BD biosciences, catalog#555482), PE anti-human CD34 (BD biosciences, 550761), Alexa Fluor 488 Donkey anti Chicken (Jackson Immuno Research, catalog#703-545-155), Alexa Fluor Cy3 Donkey anti Rat (Jackson Immuno Research, catalog#712-165-153), and Alexa Fluor 488 Donkey anti Rabbit (Jackson Immuno Research, catalog#711-545-152).
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10

Single-Cell Kidney Immune Cell Analysis

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Flow cytometry was performed as previously reported (7 (link)). Briefly, after perfusion of the kidneys with PBS, 1 kidney was removed, minced into fragments, and digested in RPMI 1640 containing 2 mg/ml collagenase type D and 100 μg/ml DNase I for 45 minutes at 37°C, with intermittent agitation. Kidney fragments were passed through a 40 μm mesh (Falcon; BD Biosciences), yielding single-cell suspensions. Cells were centrifuged (300g, 10 minutes, 4°C), resuspended in FACS buffer, kept on ice, and counted using a Bio-Rad TC20 automated cell counter. 105 cells were incubated in 2.5 μg/ml Fc blocking solution and stained for 60 minutes at 4°C with antibodies, including FITC rat anti-mouse CD45, APC anti-Ly6G, PE/Cy7 anti-mouse F4/80, Pacific Blue anti-mouse CD11b, APC anti-mouse CD11c, or isotype control (all BioLegend). Cells were then washed and stained for 15 minutes at room temperature with annexin V or H2DCFDA and resuspended in 1× annexin binding buffer (or PBS with 1% BSA for H2DCFDA). For cell cycle analysis, cells were stained with propidium iodide at 50 μg/ml. After immunostaining, cells were analyzed immediately on a Novocyte flow cytometer with NovoExpress Software (Acea Biosciences) for data acquisition, and data analysis was performed using FlowJo v10 software (Tree Star).
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