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158 protocols using cm dii

1

Labeling and Injecting MSCs in Ischemic Stroke

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MSCs were labeled with the lipophilic fluorochrome chloromethylbenzamido dialkylcarbocyanine (CM-DiI, Molecular Probes, USA) which was dissolved in dimethyl sulfoxide that had been incubated at 37 °C for 5 min and at 4 °C for 15 min (with a density of 1 ug CM-DiI per million cells) and then washed twice. After 2-h middle cerebral artery occlusion (MCAO) and 24-h reperfusion, rats in the MSCs and MSCs + Ex group were injected with 1 ml of phosphate-buffered saline (PBS) containing 3 × 106 MSCs labeled with CM-DiI via the tail vein. Rats in the control group were injected with a comparable volume of PBS.
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2

Purification and Labeling of Ebola Virus

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The culture supernatant containing EBOVΔVP30-neo from Vero VP30 was harvested and centrifuged at 3,500 rpm for 15 min to remove cell debris. Viral particles were then precipitated through 20% sucrose by centrifugation at 13,000 rpm for 1.0 h at 4 °C using an SW32 rotor (Beckman Coulter). The pellet was then resuspended in PBS and fractionated through a 20%–50% sucrose gradient in PBS at 28,000 rpm for 2.5 h at 4°C using an SW41 rotor (Beckman Coulter). The fractionated viral particles were fluorescently labeled with the lipophilic tracer CM-DiI (Molecular Probes) by incubating them in 5 μM CM-DiI solution in the dark for 1 h at room temperature, followed by centrifugation at 27,000 rpm for 2.0 h at 4°C to remove excess dye. The pellet was resuspended in PBS and stored at -80°C until use.
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3

Clonal Analysis in Hindbrain Boundary Cells

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For clonal analysis, embryos of st.15 had their roof plate carefully opened. Transfection mix (10 % glucose in 1XPBS, 0.1 μL Turbofect in vivo (Thermo Scientific, USA) containing 1.5 μg AFP plasmid was directly injected to a few hindbrain boundary cells using a fine-pulled glass capillary. Transfection embryos were then electroporated as described above. Next, embryos were incubated for 10–24 h prior to harvesting. Harvested embryos were fixed and stained with Sox2 and 3A10 antibodies and their hindbrains were flat-mounted as described above. For CM-DiI labeling, CM-DiI (C-7000, Molecular Probes) was dissolved in 100 % ethanol to a concentration of 1 mg/mL, which was then further diluted 1:10 in DMSO to working concentration of 10 μg/mL. Labeling was performed in ovo by directly injecting CM-DiI into the hindbrain of st.15 embryos. Hindbrains were harvested 24 h later, fixed and placed on slides for microscopic observation.
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4

Fluorescent Labeling of MSC Exosomes

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MSCs were labeled with a fluorescent dye CM-DiI (Molecular Probes, US) by incubating them in the CM-DiI working solution (1 µM) for 15 min at 37°C, followed by washing with PBS and centrifuging at 100,000 g for 2 h at 4°C. The excess dye was removed by precipitation of exosomes. HUVECs were previously cultured to 80% confluency and incubated with DMEM containing CM-DiI-labeled exosomes for 12 h at 37°C with 5% CO 2 . After incubation, cells were washed with PBS and fixed in 4% paraformaldehyde at room temperature. The nucleus of cells were stained using medium containing 4,969-diamidino-2-phenylindole (DAPI; Vector Laboratories, USA). Cellular uptake of MSC-derived exosomes by HUVECs was observed using an inverted fluorescent microscope (IX71-A12FL/PH, Olympus, Japan).
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5

Osteoblastic mRNA Expression in MSC-OBC Co-culture

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To assess endogenous levels of osteoblastic mRNAs in osteogenically differentiating MSCs in contact with OBCs, MSCs and OBCs were co-cultured in a 1:4 ratio at 9,000-10,000 cells/cm2. Before co-culture, trypsinized MSCs were stained with the cell tracker CM-DiI (Thermo Fisher, Waltham, MA; 106 cells/mL + 8 μL CM-DiI, 37 °C, for five min, then 4 °C, for 15 min) to distinguish them from OBCs and to allow subsequent fluorescence-activated cell sorting (FACS). Three co-culture combinations were tested in both EM and OM: (1) DiI-labeled MSCs mixed with unlabeled OBCs, (2) DiI-labeled MSCs mixed with unlabeled MSCs, and (3) unlabeled, MSC-only cell populations, with the latter two conditions serving as controls. Samples were harvested pre-culture, and at culture days 6 and 12. MSC-only cultures were trypsinized, centrifuged, resuspended in 1 mL Trizol (Invitrogen), and stored at -80 °C; mixed cultures were trypsinized and frozen in dimethyl sulfoxide (DMSO) freeze medium (BioVeris Corporation, Gaithersburg, MD, USA) until the time course was complete. The DiI-positive cells were fractionated using a Becton-Dickinson three-laser Dako MoFlo FACS sorter, pelleted by centrifugation, resuspended in 1 mL Trizol, and stored at -80 °C. Osteogenesis was assessed by conventional real time RT-PCR and by PCR array analysis (SuperArray, Qiagen, Valencia, CA, USA; see below).
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6

Embryonic Development of Skate Leucoraja erinacea

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All animal work complied with protocols approved by the Institutional Animal Care and Use Committee at the Marine Biological Laboratory (MBL; Woods Hole, MA, USA). Skate (Leucoraja erinacea) eggs were obtained from the Marine Resources Centre of the MBL. Staging was carried out according to Maxwell et al. (2008) (link) and Ballard et al. (1993) (link). Embryos for histological and gene expression analyses were fixed in 4% paraformaldehyde (PFA) in 1× phosphate-buffered saline (PBS) overnight at 4°C, then rinsed in 1× PBS, dehydrated into methanol and stored in methanol at −20°C prior to analysis. Embryos for cell-lineage tracing experiments were maintained in a flow-through seawater system at ∼15°C. For CM-DiI (ThermoFisher) labelling of the mandibular arch at S22, eggs were windowed and microinjection of the mandibular arch with CM-DiI was performed in ovo according to Gillis and Tidswell (2017) (link). For labelling of the mandibular arch at S27, embryos were removed from the egg and anaesthetised in a petri dish of seawater containing 10 mg/ml ethyl 3-aminobenzoate methanesulfonate salt (MS-222, Sigma) prior to microinjection, according to Gillis and Hall (2016) (link). CM-DiI-injected embryos were left to develop for 6-10 weeks, and then fixed in 4% PFA in PBS overnight at 4°C, rinsed three times in PBS and stored at 4°C in PBS with 0.01% sodium azide before analysis.
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7

Labeling Purified Human LDL

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Purified human LDL, isolated as described above, was covalently labeled using CM-DiI. Briefly, 250 μL of ethanol was added to the vial containing 50 μg CM-DiI (C-7000), a thiol-reactive fluorescence compound from Invitrogen, Inc., to make a stock solution. Next, 1μL of CM-DiI stock solution was added to 1 mg (by protein) of purified LDL in 1 mL of PBS-5 mM MgCl2. The reaction mixture was allowed to stand for 30 minutes at ambient temperature then dialyzed overnight in 1 liter PBS-MgCl2 with three changes of the buffer.
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8

Lentiviral Vector Transduction of EPCs

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The recombinant lentiviruses (Lenti) carrying murine CCR5 (Lenti-EGFP-CCR5) or a control transgenic EGFP (Lenti-EGFP) were prepared as previously described [19 (link)]. Passage 2 of EPCs was used for lentivirus transfection. Prior to transfection, cultured EPCs were labeled with CM-DiI (4 mg/mL; Molecular Probes, Eugene, OR, USA) for 15 minutes in accordance with the protocol of the manufacturer. Then the EPCs were incubated in EBM-2 containing Lenti-EGFP-CCR5 or Lenti-EGFP particles. The lentiviral particles were removed after 24 hours. The double-labeled EPCs were harvested (passage 3) and resuspended at 1 × 106 cells/mL in PBS for administration to the mice.
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9

THP-1 Monocyte Adhesion Assay

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Human monocyte cell line THP‐1 was cultured in RPMI 1640 supplemented with 10% FBS (Gibco) and cultured at 37°C in humidified 5% CO2 incubator. The THP‐1 cells were pre‐labelled with CM‐DiI (2 μM, Molecular Probes, Thermo Fisher Scientific) for 5 min. at 37°C and then for an additional 15 min. at 4°C in RPMI 1640. After treatment, the THP‐1 cells were added to each well of HUVECs and co‐cultured for 2 hrs. Each well was washed three times with PBS, and then, images were randomly captured at ten regions in each well at 200 × magnification using fluorescence microscope (IX71, Olympus, Japan).
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10

Adoptive Transfer of Macrophages in Colitis

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BMDMs (2 × 106) from WT or p85α+/− mice were intraperitoneally injected into WT mice 2 days before and 1 day after the start of DSS treatment. To neutralize IL-10, LEAF Purified anti-mouse IL-10 or LEAF Purified Rat IgG1κ (250 μg/mouse; Biolegend, San Diego, CA) was injected intraperitoneally into p85α+/− BMDM-transferred WT mice 2 h before the start of DSS treatment and then every other day. To trace the transferred BMDMs in vivo, BMDMs were labeled with the fluorescent membrane marker CM-DiI (Molecular Probes, Eugene, OR) according to the manufacturer’s instructions and injected into mice. After 2 days, cLP cells were isolated from the mouse colons and the proportion of the CD11b+F4/80+CM-DiI+ intestinal macrophages was analyzed using a FACSCanto II flow cytometer.
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