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Gc ms

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The GC-MS is a laboratory instrument that combines gas chromatography (GC) and mass spectrometry (MS) technologies. It is used for the identification and quantification of a wide range of chemical compounds in complex mixtures. The GC component separates the individual components of the mixture, while the MS component identifies and measures the specific compounds based on their molecular weights and fragmentation patterns.

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8 protocols using gc ms

1

GC-MS Analysis of Pulp and Paper Mill Effluents

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GC–MS analysis of organic pollutants from the pulp and paper mill effluents was carried out on the ethyl acetate extract samples as per the method described by Chandra et al. (2011 (link)). For the GC–MS analysis, dioxane (100 μl) and pyridine (10 μl) were added to the samples, followed by 50 μl BSTFA [N,O-bis(trimethylsilyl) trifluoroacetamide) containing TMCS (trimethylchlorosilane) (Raj et al., 2007 (link)). The solution was heated at 60°C for 15 min with periodic shaking to dissolve the residue. Silylated samples (1 μl) were injected into a GC–MS (PerkinElmer, UK) equipped with a PE-5MS capillary column (20 m × 0.18 mm internal diameter, 0.18 μm film thickness) and using helium at a flow rate of 1 ml/min as the carrier gas. The column temperature was set at 50°C for 5 min, then ramped from 50 to 300°C at 10°C/min and held for 5 min. The transfer line and ion-source temperatures were maintained at 200 and 250°C, respectively. Electron ionization mass spectra were recorded at 70 eV in the 30–550 m/z range with a solvent delay of 7 min. The organic pollutants present were identified by comparing their mass spectra with those of known compounds given in the National Institute of Standards and Testing (NIST) library.
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2

GC-MS Analysis of Malathion and Chlorpyriphos

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A Perkin Elmer GC-MS consisting of Auto system XL Gas Chromatograph with a Turbo Mass Spectrometer was used for analysis. The column used in this study is Elite-5MS fused-silica capillary column (30 m×0.32 mm I.D., 0.25 mm film thickness). Carrier gas used was helium (purity 99.999%) with a flow rate of 1.6 ml min−1. A 1 µl aliquot of the extract was injected using the splitless mode. The oven temperature program is 100°C for 1 min and then @ 20°C min−1 to 210°C and hold for 1 min; then @45°C min−1 to 300°C and hold for 1 min. The total runtime of the GC is 9.5 min. Base peaks 173, 158, 127 m/z for malathion as target ion as well as 314, 286, 258 m/z for chlorpyriphos were noticed as qualifiers in selective ion mode (SIM) for analysis. The injector temperature was set at 300°C. The transfer line and source temperature was set at 280°C and 230°C respectively. Solvent delay for MS is 5 min.
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3

GC-MS analysis of A. altilis leaf extracts

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The optimized crude extracts from the leaves of A. altilis were analysed using a PerkinElmer GC-MS. The inert gas, helium, was used as a carrier gas at a constant flow rate of 2 mL/min. Detector and injector temperatures were maintained at 250 °C. The initial oven temperature was set at 45 °C for 0.5 min, ramped at 10 °C/min until 150 °C and held for 1.0 min. Finally raised to 250 °C at 4 °C/min and held for 20.0 min. The sample was diluted with ethanol. The diluted sample (1 μL) was taken in a syringe and injected into the injector. The percentage compositions of the crude extract constituents were expressed as a percentage by peak area. The chemical components of the crude extract were determined by comparison of their GC retention indices and mass spectra with those reported in the literature and the National Institute of Standards and Technology (2017) library41 . In addition, all the major compounds were validated using authentic compounds (hexadecanoic acid, cis-13-octadecanoic acid and cinnamic acid) using the same condition above42 (link),43 (link).
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4

Comprehensive Analytical Techniques Protocol

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The study
utilized various apparatus and equipment, including the Hei-Tec heating
magnetic stirrer, manufactured by Heidolph in Germany, an HR-100A
analysis scale (A & D), a vacuum pump MZ 2C NT model manufactured
by Vacuubrand, a company based in Germany, a type Z 326 benchtop centrifuge
(Hermle Labortechnik, Germany), a heating mantle, manufactured by
Electrothermal Engineering in the United Kingdom, a 3608 vacuum oven
(Thermo Fisher), a WFH-203B UV analyzer (China), an inverted microscope
(OPTIKA, Italy), a CO2 incubator, a Luna-FLTM Fluorescence
Cell Counter L20001 (Korea), precoated TLC sheets (ALUGRAM, Germany),
a GloMax Multi detection system (Promega), an AvanceCore NMR spectrometer
(Bruker, Germany), an Optronic Melting Point Meter M3000 (KRÜSS,
Germany), a PerkinElmer spectrum two FT-IR spectrometer (PerkinElmer),
and GC-MS (PerkinElmer).
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5

Volatile Compound Analysis by GC-MS

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Volatile compounds in the concentrated extract were separated and detected by using a gas chromatography-mass spectrophotometer (GC-MS) (Perkin Elmer, Waltham, USA). The separation of volatiles was carried out in an ELITE 1 non-polar capillary column (30 m X 0.25 mm (ID); 0.25 μm film thickness). One microliter of extract was injected (split ratio 1:10) into the injection port and carried along the capillary column by helium gas (99.9%) at a flow rate of 1 mL min−1. The oven temperature was held at 100 °C for 6 min, heated at 4 °C min−1 to 150 °C, then at 8 °C min−1 to 220 °C and held at 220 °C until an approximate run time of 40 min.
The mass spectrophotometer was operated in the electron impact mode and mass spectra were taken using an ionization voltage of 70 eV. The mass scan range was 40–400 AMU, with a scanning speed of 0.2 s. Data acquisition and generation of chromatograms and mass spectra were done with the TurboMass software [29 (link)].
The identification of volatile compounds was performed by comparing the mass spectra with the standard spectra database from the NIST Ver. 2.1 2009 Mass Spectra Library. The proportion of each compound was calculated by comparing the peak area with the total area.
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6

Carbonyl Compounds Extraction and Analysis in Rainwater

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A 100 mL rainwater or other aqueous sample was poured into a glass bottle (200 mL size) and 1 mL PFBHA solution (1 mg/mL) was added simultaneously. The aqueous solution in the bottle was adjusted to pH 6.0 by 3 mL NaH2PO4‐HCl buffer solution and left overnight (14 h) for the completeness of derivatization reaction between carbonyls and PFBHA 21. The stir bar was put into the glass bottle containing 105 mL sample solution after the addition of 1 mL NaCl solution, which was located on a magnetic stirring plate. The stir bar was employed to extract carbonyl derivatives at speed of 500 rpm for 1 h. After extraction the stir bar was removed from the sample solution and dried by a tissue paper to clean the solution adhering to its surface. The stir bar was transferred into 2.0 mL acetonitrile as desorption solvent a 10 mL vial and desorbed by ultrasonic bath for 30 min. One microliter of the remaining acetonitrile solution was directly injected into a Perkin Elmer GC–MS (Waltham, USA) for analysis. The stir bar was cleaned as described above and stored in acetonitrile for future use. During the optimization process, several important SBSE parameters such as extraction time (30 min to 16 h), ultrasonic desorption time (10 min to 3 h), desorption solvents (acetonitrile, ethanol, methanol) and the temperatures of extraction solution were optimized.
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7

Isolation and Characterization of Dotriacontanoic Acid Methyl Ester

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Compound 3 (4 mg) was dissolved in five mL of 3% KOH/MeOH solution and kept undisturbed for 15 min at ambient temperature. After 15 min, 1 N HCl/MeOH was added to the solution for the neutralization. The solution was then partitioned with CHCl3, CHCl3 layer was separated, evaporated and the obtained residue was taken up for column chromatography on SiO2 (mesh 60–120) using as eluent hexane: EtOAc gradient to provide methyl ester of dotriacontanoic acid, which was verified by GC/MS (Ibrahim, Mohamed & Ross, 2016 (link); El-Shanawany et al., 2015 (link); Al-Musayeib et al., 2013 (link)). A 500-Clarus Perkin-Elmer GC/MS (Waltham, MA, USA) was applied for GC/MS analysis. The integrator combined with software (4.5.0.007 version) controller was turbo mass. A 5 MS/GC elite capillary (30 × 0.25 mm × 0.5 µm) column and helium (He) a carrier gas at 2 ml/min flow rate (55.8 cm/s flow initial with 32 p.s.i., split; 1:40) were applied. Temperature conditions including; source temperature, inlet line temperature, emission trap and electron energy were adjusted at 150 °C, 200 °C, 100 °C and 70 eV, respectively. The injector temperature at 220 °C was maintained. Whereas, the temperature of the column was set at 50 °C for 5 min, raised to 220 °C at the 20 C/min rate. MS was scanned from 50 to 650 m/z.
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8

GC-MS Analysis of Carbonyl-PFBHA Derivatives

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Separation and detection of the carbonyl‐PFBHA derivatives were performed on a Perkin Elmer GC–MS incorporating an Auto system XLGC and a quardrupole MS equipped with a DB5 column (30 m × 0.25 mm × 1.0 μm) (Agilent Technologies, Santa Clara, USA). GC conditions were as follows: the GC oven temperature was initially set at 80°C for 1 min, programmatically increased to 260°C with a ramp of 30°C min−1. The solvent delay was set at 2 min. Helium (CP Grade (N5.0) 99.999%, BOC, Guildford, UK) was chosen as the carrier gas at a flow rate of 1 mL/min. The GC injection mode was set as splitless. The temperatures of GC inlet and GC–MS transfer line were kept at 250°C. The mass spectrometer was operated in scan mode with a mass range of 100–500 Da to identify the most abundant ions of carbonyl derivatives. The chromatograms at the most abundant ion were used to quantify the concentration of derivatives in solution. In this study the most abundant ions of all carbonyl‐PFBHA derivatives are the same as ([C6F5CH2•]+) with m/z = 181 Da.
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