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132 protocols using mab360

1

Immunostaining Protocols for Cells and Tissue Sections

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For cultured cells, immunostaining was performed as previously described (X. Xu et al., 2020 (link)). Primary antibodies included rabbit anti‐YAP (ab205270, Abcam, 1:200), mouse anti‐YAP (WH0010413M1, Sigma, 1:200), mouse anti‐GFAP (MAB360, Millipore, 1:500), and rabbit anti‐Lamin B1 (ab16048, Abcam, 1:200).
For staining of tissue sections, immunostaining was conducted as previously described (C. Xie et al., 2020 (link)). Primary antibodies included rabbit anti‐YAP (ab205270, Abcam, 1:200), mouse anti‐YAP (WH0010413M1, Sigma, 1:200), mouse anti‐GFAP (MAB360, Millipore, 1:500), mouse anti‐NeuN (ab177487, Abcam, 1:500), goat anti‐Iba1 (ab5076, Abcam, 1:500), rabbit anti‐Lamin B1 (ab16048, Abcam, 1:200), and rabbit anti‐Ki67 (AB9260, Millipore, 1:200). Mounting was done after another three washes. Images were acquired by using a fluorescence microscopy or a confocal microscopy (Zeiss) and analyzed by Image J software.
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2

Western Blot and Immunofluorescence Assays

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For Western blot, the primary antibodies were as follows: rabbit anti AXL (1:500, bs-5180R, Bioss, Beijing, China), rabbit anti GAS6 (1:500, bs-7549R, Bioss), mouse anti GFAP (1:1000, MAB360, Millipore), rabbit anti CD68 (1:500, bs-0649R, Bioss), mouse anti ABCA1 (1:500, ab18180, Abcam, Cambridge, United Kingdom), rabbit anti IL-1β (1:500, ab9722, Abcam), rabbit anti TNFα (1:500, ab6671, Abcam), rabbit anti IL-6 (1:500, ab7737, Abcam), rabbit anti STAT1 (1:1000, 14994, CST), rabbit anti phospho-STAT1 (Tyr701) (1:1000, 9167, CST), and β-actin (1:1000, ab8227, Abcam). For immunofluorescence, the following antibodies were used: mouse anti GFAP (1:500, MAB360, Millipore), mouse anti NeuN (1:500, ab104224, Abcam), goat anti Iba-1 (1:500, ab5076, Abcam), rabbit anti AXL (1:500, bs-5180R, Bioss), rabbit anti GAS6 (1:500, bs-7549R, Bioss), and mouse anti ABCA1 (1:500, ab18180, Abcam). For flow cytometry, ACSA-2 antibody, anti-mouse, APC (1:50, 130-117-53, Miltenyi Biotec) and isotype control antibody, rat IgG2b, APC (1:50, 130-123-825, Miltenyi Biotec).
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3

Immunocytochemistry for Cellular Markers

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For immunocytochemistry, 35 µm sections were incubated with a blocking buffer (5% normal serum/ 0.3% Triton X-100, Bio-Rad, Irvine, CA, USA) for 1 h. The tissue was serially sectioned to 35 µm thickness and immunostained with primary antibody [49 (link)]. The sections were incubated with primary anti-Iba-1 (1:200; catalog no. ab87117, abcam), anti-GFAP (1:200; catalog no. MAB360, milipore), and anti-NeuN (1:200; catalog no. 324307s, cell signaling) overnight. Nucleus staining was performed with DAPI. An Axiophot microscope (Leica, TCS SP8, Wetzlar Germany) was used for the analysis of double-stained sections. The immunodensities in the graphs were quantified using the ImageJ program software.
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4

Immunohistochemical Labeling of Goldfish Brain

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After overnight fixation, female goldfish brains were washed and embedded in Shandon Cryomatrix (Thermo Scientific), snap frozen in liquid nitrogen, and kept at −80°C. Frozen blocks were sectioned and blocked in blocking buffer (0.3% Triton PBS containing 1% bovine serum albumin (BSA) for 45 min at RT. Brain section and fixed cell slides were covered with the anti-GFAP (mouse, 1:800, Millipore, MAB360) (Forlano et al., 2001 (link)), anti-aromatase B (rabbit, 1:800, from the lab of O. Kah (Menuet et al., 2003 (link); Pellegrini et al., 2007 (link)), anti-D1R antibody (rabbit, 1:500, Acris, AP09962PU-N), or anti-TH antibody (rabbit, 1:500, Abcam, AB152) (Yamamoto et al., 2011 (link)) then incubated with donkey anti-rabbit Alexa fluor 488 (1:500, Molecular Probes) and goat anti-mouse Alexa fluor 596 (1:500, Molecular Probes) for 1 h at RT. Slides were washed and mounted with the antifading medium Vectashield with 4,6-diamino-2-phenylindole (DAPI). Images were taken by Nikon A1RsiMP confocal microscope with Nikon's Imaging Software NIS-Elements. Neuroanatomical nomenclature follows Peter and Gill (Bannerman et al., 2006 (link)).
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5

Examining Neuroinflammation and Neuron Viability

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The fixed brain slices were dehydrated with graded alcohol, embedded in paraffin wax, and coronally sectioned at 6 μM. Immunohistochemistry of sections was performed using antibodies against glial fibrillary acidic protein (GFAP, Cat.no. MAB360, Millipore) and neuronal nuclei (NeuN, Cat.no. MAB 377, Millipore) to evaluate the infiltration of inflammatory cells and viability of neurons. The positive cells were randomly counted in 5 areas per section and 3 sections of each monkey from 6 monkeys per group, and then averaged the data.
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6

Western Blot Analysis of Alzheimer's Markers

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Immunoblots was performed as described previously [16 (link)]. Briefly, for Western blot analysis, samples (30 μg protein) were separated by SDS-polyacrylamide gel electrophoresis (PAGE) and were then transferred to polyvinylidene difluoride (PVDF) membranes. The primary antibodies used were as follows: mouse anti-GFAP antibody (GFAP, Millipore, MAB360, 2041104), mouse anti-APP antibody (Millipore, MAB348, 25030193), rabbit anti-CTF antibody (Millipore, AB5352, 22051154), rabbit anti-neprilysin (NEP) antibody (Millipore, AB5458, LV1423485), rabbit anti-IDE antibody (Millipore, AB9210, 2769024), mouse anti-β-actin antibody (Millipore, MAB, LV1460528) and goat anti-Iba-1 antibody (Abcam, ab5076, GR268568-3). The secondary antibodies were anti-rabbit IgG antibody conjugated with horseradish peroxidase (HRP; Jackson ImmunoResearch, 711-035-152) and anti-mouse IgG antibody conjugated with HRP (Jackson ImmunoResearch, 715-035-151). The immune complexes were detected using enhanced chemiluminescence reagents (GE Healthcare, Chicago, IL, USA). The images were obtained and quantified using a LAS-3000 Image Analyzer (Fujifilm, Tokyo, Japan).
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7

Neuroinflammatory Responses to HIV-1 gp120 and Morphine

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Young adult C57BL6 mice (2-3 months old, 20-25 g) were purchased from Harlan Labs. Both male and female mice were used in the experiments, and no significant gender effects were observed. All animal procedures were performed by following an animal protocol that was approved by the University of Texas Medical Branch Animal Care and Use Committee.
Morphine (10 mg/mL) was purchased from West-Ward, and recombinant HIV-1Bal envelope glycoprotein gp120 (Cat # 4961) was obtained from NIH AIDS Research and Reference Reagent Program, Division of AIDS, National Institute of Allergy and Infectious Diseases. Antibodies used for immunoblotting and/or immunostaining included: GFAP (1:5000, 04-1062 for immunoblotting; 1:500, MAB360 for immunostaining; Millipore), IL-1β (1:500, ab1413-I, Millipore), TNF-α (1:500, ab2148P, Millipore), and β-actin (1:1000, sc-1616-R, Santa Cruz Biotechnology).
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8

Antibody Characterization for Iron Metabolism

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The following antibodies were used: β-actin antibody (cw0096m, CWbio, China), FPN1 antibody (MTP11-S, ADI, USA), DMT1 (+IRE) antibody (NRAMP21-S, ADI, USA), 4-HNE antibody (HNE-11S, ADI, USA), TfR1 antibody (ab84036, Abcam, USA), L-ferritin antibody (ab109373, Abcam, USA), H-ferritin antibody (ab183781, Abcam, USA), hepcidin antibody (ab30760, Abcam, USA), Aβ22–35 antibody (A3356, Sigma, USA), phospho-p38 (p-p38) antibody (4511S, CST, USA), p38 antibody (8690S, CST, USA), phospho-ERK (p-ERK) antibody (9102S, CST, USA), ERK antibody (4372S, CST, USA), Bcl-2 antibody (12789-1-AP, Proteintech, China), Bax antibody (50599-2-Ig, Proteintech, China), GFAP antibody (MAB360, Millipore, USA), Iba1 antibody (MABN92, Millipore, USA), NeuN (ab104224, Abcam, USA), CD31 (77699T, CST, USA), PSD-95 (ab18258, Abcam, USA), anti-rabbit IgG (RPN4301, Amersham, UK), anti-mouse IgG (RPN4201, Amersham, UK), DyLight 488 goat anti-mouse IgG (A23210, Abbkine, USA), DyLight 549 goat anti-rabbit IgG (A23320, Abbkine, USA), and DyLight 549 goat anti-mouse IgG (A23310, Abbkine, USA).
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9

Immunohistochemistry of Amylin, GFAP, and MBP

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We used brain tissues from humans, HIP, WT and AKO rats. Tissues were processed as previously described6 (link),29 (link). Antibodies against amylin (1:200, T-4157, Bachem-Peninsula Laboratories, CA), glial fibrillary acidic protein (GFAP; 1:600, MAB360, Millipore, MA) or myelin basic protein (MBP; 1:5,000, AMAB91064, clone CL2829, Sigma, MO) were the primary antibodies. Anti-mouse or anti-rabbit IgG (1:50, A3562, A3687, Sigma, MO) were secondary antibodies. The specificity of the amylin antibody in both human and rat brain tissues was established in previous studies6 (link),7 (link),29 (link).
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10

Histological Analysis of Neuroinflammation in Mouse Model

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Histological examination was performed 8 h after the last injection of GSK1016790A or HC-067047 or 3 d after the onset of SE. Mice were anesthetized and then transcardially perfused with ice-cold phosphate-buffered saline (PBS), followed by 4% paraformaldehyde. After the brains were removed, they were placed in fixative (4 °C) overnight and processed for paraffin embedding. Coronal sections (5 μm) were cut from the level of the hippocampus for toluidine blue staining. For glial fibrillary acidic protein (GFAP) and ionized calcium binding adapter molecule-1 (Iba-1) staining, the brains were coronally sectioned at 40 μm, and free-floating sections were incubated with primary antibodies against GFAP (Cat: MAB360, 1:1000, Millipore, Billerica, MA, USA) or Iba-1 (Cat: ab5076, 1:1000, Abcam, Cambridge, UK) overnight at 4 °C, followed by biotin-conjugated goat anti-mouse IgG (Cat: ab6788, 1:2000, Abcam, Cambridge, UK) and biotin-conjugated rabbit anti-goat IgG antibody (Cat: ab6740, 1:100, Abcam, Cambridge, UK). The surviving neurons, GFAP-positive (GAFP+) and Iba-1-positive (Iba-1+) cells were observed using a light microscope (Olympus DP70, Olympus Corporation, Tokyo, Japan) and counted as previously described3 (link),19 (link).
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