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Pgm type 3

Manufactured by Merck Group
Sourced in United States, Denmark

The PGM type III is a laboratory equipment product manufactured by Merck Group. It is a precision instrument designed for use in various scientific applications. The core function of the PGM type III is to perform accurate and reliable measurements, but its intended use is not specified in this factual and unbiased description.

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17 protocols using pgm type 3

1

PGM Capture for Sewage Concentration

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Samples were prepared following method B and after incubation with the OmniCleave Endonuclease, porcine gastric mucin (PGM) capture was applied (Fig. 1). Type III PGM (7.5 mg/mL, Sigma, France) was conjugated to MagnaBind TM carboxyl-derivatized beads (Pierce Biotechnology, Rockford, IL, USA) according to the manufacturer’s protocol. Subsequently, 100 µL of PGM-bead suspension was mixed for 1 hour at room temperature with 3 mL glycine buffer PEG sewage concentrate (Tian et al. 2008 (link)). After capturing the beads using a magnetic rack, the supernatant was discarded and the beads were released and suspended in 1 mL of sterile water. This volume was further diluted in the lysis buffer for nucleic acid extraction as described below.
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2

Glycan Binding Assay for Norovirus P Proteins

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Glycan binding assays were carried out as described previously [51 (link)] using oligosaccharides representing various HBGA types, well-defined human saliva samples from donors with type O, A, B, and non-secretor (N) blood types, and/or pig gastric mucin (PGM). Briefly, polyacrylamide-oligosaccharides (GlycoTech Inc) at 2 µg/mL, pretreated saliva samples (our lab stocks) at 1:1000 dilution, or type III PGM (Sigma-Aldrich) 5 µg/mL were coated on microtiter plates at 4°C overnight. After blocking with 5% (w/v) non-fat milk, the coated HBGAs were incubated with the wild type or mutant P proteins (10 µg/mL or indicated concentrations) for 60 min at 37°C. The bound P proteins were detected as described previously [21 (link),22 (link)], using an in-house hyperimmune guinea pig serum against huNoV VLPs [51 (link)].
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3

ELISA of VP8* Ligand Capture

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After IPTG induction, three groups of E. coli BL21 containing plasmid constructs p-I-TB-VP8*, p-I-TB and p, were collected by centrifugation, and then washed and resuspended in PBS as described above. The three groups of E. coli BL21 were incubated with 1.0 mg/mL (final concentration) type III PGM (Sigma, USA) and PBS at 37 °C for 1 h with gentle shaking, respectively. PBS was used as a negative control. Then bacteria were collected by centrifugation at 4 °C, 8000 ×g for 5 min. After washing twice with PBS, the VP8* with captured ligands was released by thrombin digestion as described above. According to our previous reports (Xu et al. 2017 (link); Niu et al. 2015 (link)), the optimal dilutions of anti-type A HBGA monoclonal antibody BG2 (MAb, Covance, Emeryville, CA, United States) and secondary antibody, a peroxidase-conjugated goat anti-mouse IgG (H + L chains; Yeasen, Shanghai, China) were determined experimentally to be 1: 1000 and 1: 3000 in blocking buffer. The steps of ELISA have been described above.
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4

Preparation of PGM Stock Solution

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To prepare a stock solution, 200 mg of type III PGM (Sigma-Aldrich, St Louis, MO, USA) was dissolved in 50 mL autoclaved distilled water, at room temperature (25 °C). The pH of the stock solution of PGM (4 mg/mL) was measured by using a digital pH meter (Thermo Scientific, Waltham, MA, USA). The stock solution was diluted with autoclaved distilled water, according to the required concentration of PGM for different assays.
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5

Detecting VLPs Binding to PGM and Saliva

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VLPs bound to PGM type III (Sigma Aldrich, St. Louis, MO) or human type B saliva were detected by rabbit polyclonal antiserum (Cocalico Biologicals, Stevens, PA), as described previously.66 (link),67 (link) For assays including bile salts, stocks were prepared in PBS, aliquoted, and stored at -20°C, and reagents were purchased from Sigma Aldrich: bovine bile (B3883), GCDCA (G-0759), and TCA (T4009). Data were graphed by single-site binding curve analysis in GraphPad Prism 8.1.1 (San Diego, CA).68
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6

Carbohydrate-Ligand-Binding Assay for VLPs

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As described previously [20 (link),25 (link)], EIA plates were coated with 10 μg/ml PGM type III (Sigma Aldrich) diluted in PBS and blocked with 5% Blotto in PBS/0.05% Tween 20. VLPs (0.5 μg/ml) were pretreated with decreasing concentrations of serum for 1 h before being added to the carbohydrate-ligand-coated plates for 1 h. Ligand-bound VLP was detected with rabbit anti-GI or -GII or -GII.4 VLP hyperimmune serum followed by anti-rabbit-IgG-HRP (GE Healthcare). All tested VLPs, except for GII.4.2012 and GII.4.2006b.P.D302, were components of the VLP cocktails used to immunize rabbits. Multivalent GII.4 VLP immunization resulted in broadly reactive serum that recognizes GII.4.2012 and GII.4.2006b.P.D302 [44 (link)]. Wash steps, Ab dilutions, and color development were completed as described above. All incubations were done at room temperature. The percent control binding was defined as the binding level in the presence of Ab pretreatment divided by the binding level in the absence of Ab pretreatment multiplied by 100. Blockade data were fit using sigmoidal dose–response analysis of nonlinear data in GraphPad Prism 6.02. EC50 values were calculated for sera that demonstrated blockade of at least 50% at the dilution series (40–20480) tested. Sera that did not block 50% of binding at the highest concentration tested were assigned an EC50 of 20 for statistical comparison.
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7

Surrogate Blocking Assay for Neutralizing Antibodies

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A surrogate blocking assay was used to measure neutralizing antibodies. Ninety-six-well plates were coated with 5 μg/mL pig gastric mucin (PGM) Type III (Sigma‒Aldrich) in PBS, incubated for 4 h at room temperature, and then blocked with 5% no-fat milk in PBST at 4 °C overnight. Serially diluted antiserum samples were mixed with an equal volume of 2 µg/mL VLPs and incubated for 1 h at 37 °C. One serum-free well was used as a control for calculating the blocking rate. Then, the mixtures were added to the PGM-coated plates and incubated for 1 h at 37 °C. After washing three times, the plates were incubated with rabbit anti-VLP antibody (Absolute antibody, UK) for 1 h at 37 °C, followed by incubation with HRP-conjugated anti-rabbit IgG for 1 h at room temperature. After color development, the absorbance was determined at 450 nm. The blocking rate was calculated as (mean OD450 treated without serum − mean OD450 treated with serum)/mean OD450 treated without serum × 100%.
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8

Serum Antibodies Blocking NoV VLPs Binding

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To examine the ability of serum antibodies to block the binding of NoV VLPs to a putative cellular histo‐blood group antigen (HBGA) receptor, two different sources of HBGAs, pig gastric mucin (PGM) type III (Sigma Chemicals, St Louis, MO, USA) and human type A saliva were utilized 42, 43. The blocking assays were conducted with the procedures described in detail elsewhere 44. Briefly, groupwise pooled twofold serum dilutions were preincubated with the 0·1 µg/ml GII.4‐1999 VLPs and the mixtures were added to 96‐microwell plates coated with 2·5 µg/ml PGM or 1 : 3000 diluted human type A saliva. Maximum VLP binding signal (OD) was determined in wells lacking serum. The bound VLPs were detected using human anti‐NoV detection serum and anti‐human IgG conjugate (Novex; Thermo Fisher Scientific, Fremont, CA, USA). Blocking index was calculated as follows: 100% − [OD (wells with serum)/OD (wells without serum, maximum binding)] × 100%. Results are expressed as the blocking titre 50 (BT50), a serum titre blocking ≥ 50% of the VLPs binding to the HBGAs 45.
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9

Bovine Milk Protein pH-Dependent Behavior

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BLG from bovine milk, BSM (Type I-S), and PGM (Type III) were purchased from Sigma Aldrich (Brøndby, Denmark), and were used as received. Protein solutions were prepared by dissolving proteins in 100 mM PBS solutions. By addition of HCl as appropriate, the pH values of the buffer solutions were adjusted to pH 7, 5, and 3 where the BLG is negatively, neutral, and positively charged, respectively [4 (link)]. All buffer solutions were filtered (polyethersulfone 0.20 mm).
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10

Serum IgG Antibody Blocking Assay for NoV VLPs

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The presence of serum IgG antibodies that block binding of NoV VLPs to the HBGA carbohydrates were determined in ELISA-based blocking assay according to previously published protocols [23 (link)]. Group-wise pooled mouse sera were examined for capability to block VLP binding on HBGAs present in pig gastric mucin (PGM, type III, Sigma-Aldrich, Saint Louis, MO, USA, Cat. M1778) [23 (link),34 (link)]. Serum two-fold dilutions were pre-incubated with 0.1 µg/mL GI.4 or GII.4-2006a NoV VLPs in sample buffer (1% milk in PBS + 0.05% tween) prior to plating on PGM-coated (2 µg/mL) and blocked (5% milk in PBS) microwell plates (Corning Inc., Corning, NY, USA, Cat. 3690). Following 1 h incubation at +37 °C, bound VLPs were detected with rabbit polyclonal anti-NoV antisera (ICON Genetics, Halle, Germany) followed by anti-rabbit IgG-HRP antibody (Abcam, Cambridge, UK, Cat. ab97051) and OPD substrate. Maximum HBGA binding of VLPs was determined in wells with VLPs lacking the serum. The blocking index (%) was calculated as follows: 100% − [(OD490 of wells with VLP and serum/OD490 of maximum binding wells) × 100%]. A 50% blocking titer (BT50) was determined as the reciprocal of the highest serum dilution able to block at least 50% of VLP-HBGA binding.
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