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50 protocols using luminata western hrp substrate

1

Western Blot and Co-Immunoprecipitation Assay

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Whole-cell lysates were prepared using RIPA Lysis Buffer (Beyotime, Shanghai, China) containing a protease inhibitor cocktail (Bimake, Houston, TX, United States) and phosphatase inhibitor (Roche, Basel, Switzerland). The protein concentration was quantified using a BCA Kit (Beyotime). An equal amount of protein (25 µg) was used for electrophoresis. Proteins were separated using 10/12% SDS PAGE and then transferred onto polyvinylidene difluoride membranes (Millipore, Billerica, MA, United States). The membranes were then blocked with a solution of 3% BSA (Solarbio) in TBS with Tween 20 (Solarbio) at room temperature for 1 h. The membranes were next incubated with primary antibodies (dilution ratio listed in Supplementary Table S3) overnight at 4°C, followed by incubation with horseradish peroxidase-conjugated anti-rabbit or anti-mouse secondary antibodies (1:5,000, Proteintech) at room temperature for 2 h. After washing, the protein bands were detected using Luminata Western HRP Substrate (Millipore) and a Gene Genius Bioimaging System (Bio-Rad, Hercules, CA, United States). Co-IP was conducted using Pierce™ Protein A/G Magnetic Beads (Thermo Fisher Scientific) per manufacturer’s instructions. Data were obtained from at least three independent experiments.
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2

Western Blot Sample Preparation

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Western blot samples were harvested and lysed either directly in reducing SDS sample buffer (Boston BioProducts BP-111R) or RIPA buffer (Tris-HCl 50 mM pH 7.4, NaCl 150 mM, NP-40 1%, sodium deoxycholate 0.5%, SDS 0.1%) supplemented with protease and phosphatase inhibitors (Leupeptin, Aprotinin, 1 mM phenylmethyl sulphonyl fluoride, Pepstatin, 1 mM sodium fluoride, 1 mM sodium orthovanadate). Lysates were clarified by centrifugation at 13,000g for 10 min and reducing SDS sample buffer was added. The cleared lysates were then boiled in 1 × sample buffer for 5 min and resolved by 4–20% SDS–PAGE gradient gels (Invitrogen), transferred to polyvinylidene difluoride membranes (Whatman), blocked with 5% BSA in TBS (25 mM Tris, 140 mM NaCl, 2.7 mM KCl, pH 7.4), 0.1% Tween 20 for 1 h at room temperature and probed by antibodies overnight. Membranes were subsequently probed with secondary antibodies linked to HRP (GE Healthcare). Western blot membranes were developed using Luminata Western HRP substrate for detection of HRP (Millipore). Western blot results were prepared using Kodak film developer and Epson 3000 scanner. Scanned films of uncropped blots are shown in Supplementary Figs 6–8.
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3

SDS-PAGE Analysis of Complement Proteins

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CVF-active mixtures were fractionated by SDS-PAGE under reducing conditions and blotted with goat anti-human FB antibody (Complement Technology, Tyler, TX, USA) or goat anti-mouse C3 antibody (MP Biomedicals, Santa Ana, CA, USA). HRP-conjugated donkey anti-goat IgG (Sigma-Aldrich, St. Louis, MO, USA) was used as the secondary antibody. Proteins were visualized in a chemiluminescence detection system (Bio-Rad ChemiDOC XRS+) using Luminata Western HRP substrate (Millipore, Billerica, MA).
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4

Western Blot Analysis of STAT and T Antigens

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Western blots were conducted as previously described (Markovics 2005 (link)) with the following antibodies: Total STAT1 (Cell Signal #9172), Phospho-STAT1 Ser727 (Cell Signal #9177), and Total STAT2 (Cell Signal #4597) and were prepared in accordance with the manufacturer’s instructions. SV40 T Antigen mouse monoclonal antibodies have been described previously: PAb416, PAb419 (Harlow 1981 (link)), and PAb901 (Fu 1996 (link)). Additional mouse monoclonal antibodies against JCV T antigens (PAb962 and AB2003) were previously described (Bollag 2000 (link), Munoz-Marmol 2004 (link)). GAPDH mouse monoclonal was used as the loading control (US Biologicals #G8140-11). Peroxidase-conjugated goat anti-mouse (A2554), and goat anti-rabbit (A0545) from Sigma-Aldrich were used as secondary antibodies. The Luminata Western HRP substrate (Millipore #WBLUF0100) was used in accordance with manufacturer’s instructions. A mixture of monoclonal antibodies 416/419/962/2003 (1:1000/1:500/1:1000/1:1000) were used for the detection of T antigen signal in Figures 2C, 3A, 4B, and 7B. Additionally, SV40-C257 detection used monoclonal Ab901 (1:500) Figure 5D, and in Figure 5B a mixture of 416/419 (1:500/1:250) was used.
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5

Western Blot and Co-Immunoprecipitation Protocols

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Whole cell lysates were prepared using RIPA buffer (Thermo Fisher Scientific) in the presence of a protease inhibitor and PhosStop (Roche, Basel, Switzerland). Protein concentration was quantified using BCA Kit (Thermo Fisher Scientific). Equal amounts of protein were blotted, and the blots were incubated with primary antibody, and HRP conjugated secondary antibody. Blots were developed using the Luminata Western HRP Substrate (Millipore, Burlington, MA, USA) and Gene Genius Bio‐imaging System (Bio‐Rad, Hercules, CA, USA). Co‐IP followed the protocol of the IP kit (Thermo Fisher Scientific).
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6

Western Blot Analysis of Fibroblast Proteins

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Following stimulation, fibroblasts were lysed with RIPA buffer (Cell Signaling Technology) containing phosphatase inhibitor cocktails 2 and 3 (Sigma-Aldrich, St. Louis, MO, USA). Nuclear lysates were prepared using a LysoPure™ Nuclear and Cytoplasmic Extractor Kit (FUJIFILM Wako Pure Chemical Corporation, Tokyo, Japan) containing protease inhibitor cocktail Set III (FUJIFILM Wako Pure Chemical Corporation). Protein levels were quantified using precision red advanced protein assay reagent #2 (Cytoskeleton, Denver, CO, USA). Equal amounts of total protein were separated on 10% SDS-polyacrylamide gels. After electrophoresis, the proteins were transferred onto an immobilon-P transfer membrane (Millipore, Billerica, MA, USA) by a PoweredBLOT 2M system (ATTO, Tokyo, Japan). The membranes were blocked with ImmunoBlock (KAC, Hyogo, Japan) for 1 h at room temperature and incubated with primary antibodies at 4 °C overnight. The membranes were washed with Tris-buffered saline with 0.1% Tween 20 and incubated with HRP-conjugated secondary antibodies. After being washed, the membranes were developed with Luminata Western HRP substrate (Millipore, Billerica, MA, USA), and the bands were detected with ImageQuant™ LAS 4000 (FUJIFILM Wako Pure Chemical Corporation). The intensity of the bands was quantified using ImageJ software (NIH, Bethesda, MD, USA).
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7

Western Blot Antibody Reagents

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Rabbit polyclonal antibody to insulin degrading enzyme (IDE, Cat. ab32216) and mouse monoclonal to β-Actin (Cat. ab6276) were from Abcam (1 Kendall Square, Suite B2304 Cambridge, MA 02139–1517, USA). Secondary antibodies include ECL Anti-rabbit IgG horseradish peroxidase linked whole antibody (from donkey, Cat. NA934V, and ECL Anti-mouse IgG horseradish peroxidase linked whole antibody (from sheep, Cat. NA931V, GE Healthcare UK limited, Little Chalfont Buckinghamshire, HP7 9NA UK). Immobilon-PSQ PVDF Transfer Membranes (Cat. ISEQ 10100) and Chemiluminescence reagent Luminata Western HRP Substrate (Cat. WBLUF0100) were from Millipore (Billerica, MA 01821). The X-ray film was from Phenix Research (Cat. F-BX810, Candler, NC, USA).
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8

Western Blot Protein Extraction and Analysis

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Cells were washed with cold PBS and lysed in ice-cold buffer containing: 1% Triton X-100, 150 mM NaCl, 5 mM EDTA, 1% Sodium deoxycholate, 10 mM PO4Na2/K buffer, a protease inhibitor cocktail (Sigma-Aldrich) and a phosphatase inhibitor cocktail PhosSTOP (Roche, Basel, Switzerland). The lysates were centrifuged at 15 000 × g at 4°C for 15 min to remove cell debris and supernatant protein concentration was determined by the BCA protein assay kit (Thermo Fisher Scientific, Courtaboeuf, France). In all, 30 μg of total protein was subjected to SDS-PAGE followed by transfer onto PVDF membranes using the Trans-Blot SD semi-dry transfer cell (Bio-Rad, Marnes-la-Coquette, France). The membranes were blocked in a 5% fat-free milk containing TNT buffer (Tris-HCl, pH 7.5, 140 mM NaCl and 0.05% Tween-20) for 1 h at room temperature. The membranes were next incubated overnight at 4°C with primary antibodies, and then for 1 h at room temperature with secondary antibodies conjugated to horseradish peroxidase. After washing, the membranes were processed for chemiluminescence detection using Luminata Western HRP substrate (Millipore, Billerica, MA, USA). Image J software (NIH, Bethesda, MD, USA) was employed for quantitative analysis.
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9

Protein Expression Analysis in Frozen Tissue

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Frozen tissue was homogenized with Quiagen Tissue Ruptur in 1.5 ml of cold 20 mM HEPES buffer, pH 7.2, containing 1 mM EGTA, 210 mM mannitol, 70 mM sucrose and centrifuged at 1.500×g for 5 min at 4°C. Samples were then analysed by SDS gel electrophoresis (Novex, Life technologies, Australia) and electroblotted to Hybond Nitrocellulose membranes (Amersham Pharmacia Biotech, Bucks, UK). Membranes were then probed with primary antibodies to GLUT1 (ab652, Abcam, Cambridge, UK), SGLT2 (sc98975, Santa Cruz, USA) and actin (Santa Cruz, USA). Proteins were visualized using Luminata Western HRP Substrate (Millipore) in a LAS 4000 image reader (GE Healthcare Life Sciences). Analysis was performed using Image J software (NIH, USA).
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10

Western Blot Analysis of Apoptosis Markers

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OGCs in different groups were collected and lysed in radioimmunoprecipitation assay (RIPA) buffer (Solarbio) containing 1 mM phenylmethanesulfonyl fluoride (PMSF) (Solarbio) at 4 °C for 30 min. The protein concentration was determined with a BCA Protein Assay Kit. Up to 50 µg of protein was electrophoresed on 12% SDS-polyacrylamide gels and transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore), which were blocked with 5% nonfat dry milk (BD Biosciences) for 1 h at room temperature. The membranes were then blotted with primary antibodies at 4 °C overnight. The following primary antibodies were used: β-actin (1:1,000, Proteintech, Rosemont, IL, USA), B cell lymphoma 2 protein (Bcl-2, 1:1,000, Cell Signaling Technology), Bcl-2-associated X protein (Bax, 1:2,000, Abcam), caspase-3 (1:1000, Cell Signaling Technology), cleaved caspase-3 (1:1,000, Cell Signaling Technology) and cleaved poly-ADP-ribose polymerase (cleaved PARP, 1:250, Abcam). Then, the PVDF membrane was washed 3 times with Tris-buffered saline/Tween (Solarbio) and incubated with HRP-conjugated secondary antibody (1:10,000, ZSGB-BIO) for 70 min at room temperature. Detection was performed using Luminata western HRP substrate (Millipore). The results were obtained with a LI-COR 3600 instrument (LI-COR Biosciences, Lincoln, NE, USA) and analysed with an Image Studio Digits Version 4.0 system; n = 5.
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