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6 protocols using donkey anti goat hrp conjugated igg

1

Tumor Cell Lysis and Protein Detection

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Tumor cells infected by recombinant VVs were lysed in buffer: 50 mM Tris (pH 8.0), 5 mM EDTA, 150 mM NaCl containing 0.1% SDS, 1x complete protease inhibitor cocktail (Roche Diagnostics GmbH, Mannheim, Germany), and 1 mM PMSF. Samples (30 μg) were separated by 10% SDS-PAGE and transferred to a Trans-Blot nitrocellulose membrane (Bio-Rad Laboratories) by a wet blotting procedure (100 V, 500 mA, 90 min, 15°C) using “Mighty Small Transphor” (GE healthcare Bio-Science AB, USA). Immunodetection was performed using iBind system (Life Technologies), iBind Cards (Invitrogen, Thermo Fisher Scientific) and antibodies: ANTI-FLAG BioM2 antibody (Sigma-Aldrich, F9291), BAX (1 : 1000, Abcam), cyclin B1 (1 : 60, Sigma-Aldrich), tubulin (1 : 200, Sigma-Aldrich), GAPDH (1 : 100, R&D), and HMGB1 (1 : 6000, Abcam) and using goat anti-mouse HRP-conjugated polyclonal IgG (1 : 200, Abcam) or donkey anti-goat HRP-conjugated IgG (1 : 200, R&D) as secondary antibodies, with Novex ECL HRP chemiluminescent substrate reagent kit (Invitrogen, USA). A C-DiGit blot scanner (Li-COR Bioscience) was used for luminescent detection. Densitometric analysis of the western blot data was performed using the image analysis software Gel-Pro Analyser (Media Cybernetics) version 3.1.
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2

Comprehensive Cancer Cell Characterization

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Cisplatin, doxorubicin, everolimus (afinitor) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Phycoerythrin (PE)-conjugated mouse anti-human CD44 monoclonal (#MHCD4404) and fluorescein isothiocyanate (FITC)-conjugated mouse anti-human CD24 monoclonal (#MHCD4201) antibodies were purchased from Molecular Probes (Invitrogen, Carlsbad, CA, USA). FITC-conjugated mouse anti-human HER2 monoclonal (#2222020), FITC-conjugated mouse anti-human CD326 monoclonal (#2221020), PE -conjugated mouse anti-human CD324 monoclonal (#2220530), PE -conjugated mouse anti-human CD325 monoclonal (#2354025), allophycocyanin (APC)-conjugated mouse anti human HER3 monoclonal (#2223540), APC-conjugated mouse anti human CD146 monoclonal (#2310060) antibodies were purchased from Sony Biotechnology Inc. (San Jose, CA, USA). FITC-, APC-, and PE-conjugated IgG controls were from BD Biosciences. Vimentin mouse monoclonal (ab8069) and rabbit polyclonal to Ki-67 (ab15580) antibodies were from Abcam (Cambridge, United Kingdom). Secondary antibodies Donkey Anti-Mouse IgG H&L (ab97029, Abcam), Alexa Fluor® 594 goat anti-rabbit IgG1 (Thermo Fisher Scientific), goat anti-mouse HRP-conjugated polyclonal IgG (Abcam) and donkey anti-goat HRP-conjugated IgG (R&Dsystems) were used.
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3

Western Blot Analysis of Tumor Cell Lysates

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Tumor cells were lysed in buffer: 50 mM Tris (pH 8.0), 5 mM EDTA, 150 mM NaCl containing 0.1% SDS, 1× complete protease inhibitor cocktail (Roche Diagnostics GmbH, Mannheim, Germany) and 1 mM PMSF. Samples (30 μg) were separated by 10% SDS-PAGE and transferred to a Trans-Blot nitrocellulose membrane (Bio-Rad Laboratories) by a wet blotting procedure (100 V, 500 mA, 90 min, 15 °C) using “Mighty Small Transphor” (GE healthcare Bio-Science AB, USA). Immunodetection was performed using iBind system (Life Technologies), iBind Cards (Invitrogen, Thermo Fisher Scientific) and antibodies: Vimentin mouse monoclonal antibody (1:50), GAPDH goat polyclonal antibodies (1:133), goat anti-mouse HRP-conjugated polyclonal IgG (1:200, Abcam) or donkey anti-goat HRP-conjugated IgG (1:200, R&D systems) as secondary antibodies, with Novex ECL HRP chemiluminescent substrate reagent kit (Invitrogen, USA). A C-DiGit blot scanner (Li-COR Bioscience) was used for luminescent detection. Densitometric analysis of the western blot data was performed using the image analysis software Gel-Pro Analyser (Media Cybernetics) version 3.1.
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4

Antibody-Based Protein Detection Protocols

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The following primary antibodies were used: goat polyclonal anti-adiponectin (AF1119, R&D Systems); goat polyclonal anti-T-cadherin (AF3264, R&D Systems); rabbit monoclonal anti-α-tubulin (11H10, Cell Signaling Technology); sheep polyclonal anti-human MFG-E8 (AF2767, R&D Systems); mouse monoclonal anti-human CD63 (H5C6, BD Biosciences); rabbit monoclonal anti-Tsg101 (ab125011, R&D Systems); rabbit polyclonal anti-syntenin (ab19903, Abcam); and mouse monoclonal anti-ALIX (3A9, Santa Cruz Biotechnology). The following secondary antibodies were used: horseradish-peroxidase-conjugated (HRP-conjugated) rabbit anti-sheep immunoglobulin G (IgG) (Invitrogen); HRP-conjugated donkey anti-goat IgG (R&D systems); and HRP-conjugated sheep anti-mouse IgG antibodies and donkey anti-rabbit IgG antibody (GE Healthcare).
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5

Quantifying Lung Fungal Infection and C3 Levels

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Lungs were removed 16 h after infection and homogenized in 1 ml PBS, pH 7.4, containing 0.01% (vol/vol) Tween-20® (Merck-Millipore) and protease inhibitors. Samples were serially diluted 1:10 in PBS and plated on Sabouraud dextrose agar for blinded CFU counting. For lysate preparation, lungs were collected at 4 h and homogenized in 50 mM Tris-HCl, pH 7.5, containing 2 mM EGTA, 1 mM PMSF, 1% Triton X-100 (all from Sigma-Aldrich/Merck), and complete protease inhibitor cocktail. Total proteins were measured by DC Protein Assay, according to manufacturer’s instructions (Bio-Rad Laboratories). Western blot analysis for C3 was performed after loading 10 µg of lung protein extracts on sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). The goat polyclonal anti-C3 (diluted 1:3000; Merck-Millipore, Cat. No. 204869) and HRP-conjugated donkey anti-goat IgG (diluted 1:5000; R&D Systems, Cat. No. HAF-109) were used. The monoclonal anti-vinculin (#hVIN-1; used at 0.5 µg/ml; Sigma-Aldrich/Merck, Cat. No. V9264) was used as loading control. C3d bands were quantified by Fiji-ImageJ (NIH, Bethesda USA; version 2.1.0/1.53.c) as a ratio of mean gray intensity values of each protein relative to vinculin bands.
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6

Western Blot Analysis of IL-33 in Lung

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To analyze IL-33 protein by Western blotting, lung tissues were homogenized in RIPA buffer containing protease inhibitor cocktail (Roche) and then centrifuged. Alternatively, supernatants of BAL fluids were used for analysis. The supernatant protein concentration was determined using a Pierce BCA protein assay kit (Thermo Scientific). Supernatants containing 2.5 mg of protein were incubated with a polyclonal goat anti-mouse IL-33 antibody (R&D Systems) overnight at 4°C, followed by the addition of protein A Dynabeads (DAKO, Denmark) for 1 hour. The beads were washed with PBS plus 0.02% Tween-20. Protein bound to the beads was eluted using protein sample buffer, separated over a 14% tris-glycine gel (Invitrogen), and transferred onto a nitrocellulose membrane. After protein transfer, nitrocellulose membranes were blocked in 5% milk buffer and incubated with goat anti-mouse IL-33 (1:1000), followed by HRP-conjugated donkey anti-goat IgG (R&D Systems). Blots were developed using SuperSignal West Pic (ThermoFisher), with exposure to BioMax film (Kodak, Rochester, NY).
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