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21 protocols using m60 009rdpd

1

Kidney Injury Biomarker and Cytokine Profiling

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For kidney injury biomarker and cytokine profiling shown in Figures 2B and S2, supernatants were thawed on ice, diluted 1:2 and 1:10 in sample dilution buffer (M60-009RDPD, BioRad), and analyzed by multiplex ELISA using Human Kidney Tox Panel I (Bio-plex,171-ATR1CK, analytes: calbindin, clusterin, GST-π, IL-18, KIM-1, MCP-1), Human Kidney Tox Panel II (Bio-plex,171-ATR2CK, analytes: albumin, beta2 microglobulin, cystatin C, NGAL, OPN, TFF3), and Human Cytokine and Chemokine Panel (Milliplex, HCYTOMAG-60K-PX30, analytes: EGF, G-CSF, GM-CSF, IFN-α2, IFN-γ, IL-1α, IL-1β, IL-1ra, IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-10, IL-12 [p40], IL-12 [p70], IL-13, IL-15, IL-17, IP-10, MCP-1, MIP-1α, MIP-1β, TNF-α, TNF-β, VEGF, RANTES, and eotaxin/CCL11) followed by analysis using the Bio-Plex 200 Systems (BioRad) according to manufacturer’s instructions. For analysis of human EGF and KIM-1 from Figures 2D, 3, 4, 5, 6, and 7, supernatants were thawed on ice, diluted 1:2 and 1:10 in sample dilution buffer (BioRad, M60-009RDPD), and analyzed by multiplex ELISA using Human Kidney Injury Panel 4 (Millipore, HKI4MAG-99K). Mean concentrations and SDs of triplicate wells were calculated and normalized on vehicle control.
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Multiplex Evaluation of Cytokine Profiles

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In the culture supernatants and liver homogenates, the following 27 cytokines and chemokines were measured using a multiplex ELISA kit (M60009RDPD, Bio-Rad). The cytokines and chemokines analysed were IL-1β, IL-1ra, IL-2, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-10, IL-12 (p70), IL-13, IL-15, IL-17, basic FGF, Eotaxin, G-CSF, GM-CSF, IFN-γ, IP-10, MCP-1 (MCAF), MIP-1α, MIP-1β, PDGF-BB, RANTES, TNF and VEGF. In some experiments, IL-22, IL-1α, IL-12 (p70), MIP-1α, IL-17, IFN-γ, IL-1β (88-7422-88, 88-5019-88, 88-7121-88, 88-56013-88, 88-7371-88, 88-7314-88 and 88-7013-88 from eBiosciences), KC, MIP-1β (DY453-05 and DY451 from R&D) and insulin (10124701, Mercodia) levels were measured using individual ELISA kits.
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Cytokine Profiling in Mtb-Infected Lungs

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Using a 23-plex mouse Cytokine Panel (M60009RDPD, Biorad) and a Bio-plex (multiplex ELISA-Luminex) reader, cytokines were analysed in Mtb-infected lung homogenates from NCoR1fl/fl and NCoR1MyeKO mice, according to the recommended protocol. Prior to beginning the process of quantifying cytokines in the lung tissue samples, a commercial BCA test was done as recommended by Thermo Scientific to normalise the amounts of total protein in the lung lysate samples [81 (link)–83 ].
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4

Serum Cytokine Profiling Procedure

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Serum was collected by centrifugation at 2000 g for 5 min at 4°C, aliquoted, and stored at -70°C until analysis. A multiplex cytokine assay (M60009RDPD Bio-Rad, Hercules, CA, USA) was performed in accordance with the manufacturer's instructions using the Luminex 200 system instrument (Luminex Corporation).
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Multiplex Quantification of Plasma Biomarkers

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Plasma concentrations of hormones (insulin and glucagon) and adipokines (leptin, resistin, and plasminogen activator inhibitor 1 (PAI-1)) were quantified in triplicate using a multiplex detection kit (171-F7001M, Bio-Rad, Hercules, CA, USA) according to the manufacturer’s protocol. Plasma concentrations of adiponectin and plasma cytokines (interferon γ (IFN-γ), monocyte chemoattractant protein 1 (MCP-1), and tumor necrosis factor α (TNF-α)) were quantified in triplicate using a detection kit (171-F7002M, Bio-Rad, Hercules, CA, USA) and multiplex detection kit (M60-009RDPD, Bio-Rad), respectively, according to the manufacturer’s instructions.
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Cytokine Profiling in LPS, polyI:C, and CpG-Treated Mice

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The mice were injected with either LPS (3 mg/kg), polyI:C (5 mg/kg), CpG (100 nmol/kg), or saline, returned to their home cage, and decapitated through cervical dislocation 2 hr after treatment. Trunk blood was obtained by exsanguination, centrifuged at 800 g at 4°C for 15 min, and the resultant serum was frozen immediately and stored at −80°C until use. The cytokine concentrations in the blood were determined using ELISA (catalog BMS606INST, BMS614INST, BMS607/2INST, BMS6002INST, BMS613INST; eBioscience, San Diego, CA, USA) and multiplex assays (catalog M60-009RDPD; Bio-Rad, Hercules, CA, USA) according to the manufacturer’s instructions.
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Multiplex Cytokine Quantification in BAL

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To quantify cytokines in the BAL, 50 μl of cell free undiluted supernatant from each sample was analyzed using mouse cytometric bead array flex sets (M60-009RDPD, Bio-Rad) according to the manufacturer’s instructions. Individual standards were reconstituted and serially diluted in a 96-well plate and all samples assessed by means of specific antibody-coated 7.5-mm capture beads and phycoerythrin-conjugated detection antibodies. Cytokine measurements were performed using the BioPlex-200 (Bio-Rad). Respective standard curves and cytokine concentrations were calculated with the BioPlex Manager Software 6.1 (Bio-Rad).
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8

Multiplex Cytokine and Tumor Marker Quantification

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Serum levels of mouse cytokines were analyzed by the Luminex Bio-Plex system. Cell culture supernatant cytokines were measured by the Varioskan LUX Multimode Microplate Reader (Thermo Fisher Scientific). The mouse cytokine 23-multiplex assay was carried out according to the manufacturer’s instructions (Bio-Rad, catalog M60009RDPD). Specific cytokines such as IL23, IL6, IL1β, TGF-β, TNF-α, and IL17A were measured with corresponding cytokine ELISA kits (Thermo Fisher Scientific, catalog 88-7230-88, catalog 88-7064-88, catalog 88-7013-88, catalog 88-8350-88, catalog 88-7324-88, and catalog 88-7371-88). In addition, tumor markers CEA (Lifespan Biosciences Inc, catalog LS-F5042) and CA 19-9 (Lifespan Biosciences Inc, catalog LS-F24309) were used to distinguish between benign and malignant tumors.
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9

Quantifying Plasma Adipokines and Cytokines

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Plasma concentrations of insulin and adipokines (leptin, resistin, and plasminogen activator inhibitor 1 (PAI-1)) were quantified using a multiplex detection kit (171-F7001M, Bio-Rad, Hercules, CA, USA) according to the manufacturer’s protocol. Plasma concentrations of adiponectin and plasma cytokines (interferon γ (IFN-γ), and monocyte chemoattractant protein 1 (MCP-1)) were quantified using a detection kit (171-F7002M, Bio-Rad, Hercules, CA, USA) and multiplex detection kit (M60-009RDPD, Bio-Rad), respectively, according to the manufacturer’s instructions.
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10

Multiplex Cytokine Profiling of Frozen Blood

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Cytokines were measured in blood samples frozen at −80°C using a multiplex cytokine assay kit (PRO Mouse Cytokine 23-PLEX, 1×96 [Reference: M60009RDPD/Bio-Rad Laboratories]). Cytokine levels were expressed in picograms per milliliter. The concentrations of cytokines were log transformed in order to limit influence of high concentrations and to normalize distributions.
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