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3 protocols using goat anti rat igg hrp

1

Affinity Purification of Yeast Proteins

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Yeast strains with C-terminal chromosomal tags (cMORF or myc) were grown in YPD to OD600 1–2.5 and crude extracts were made from 500–600 OD-mL pellets, followed by IgG Sepharose affinity purification and elution of bound protein with GST-3C protease. Then samples were subject to SDS-PAGE, transferred to nitrocellulose membrane (Bio-Rad), and probed with appropriate antibodies: mouse monoclonal anti-[c-myc] (Roche), followed by goat anti-mouse IgG-HRP (Bio-Rad); or rat anti-HA (Roche), followed by goat anti-rat IgG-HRP (Bio-Rad). Strains containing a PGAL-ORF240-PT plasmid were grown as described in pull-down experiment.
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2

Antibody Panel for Cellular Signaling

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Rat monoclonal anti‐large T antigen (LT; provided by B. E. Griffin, Imperial College of Science, Technology and Medicine at St. Mary's, London, UK), rabbit polyclonal antibody against GAPDH (Sigma‐Aldrich), rabbit polyclonal anti‐phospho‐IRF3 (Ser369(4D4G); Cell Signaling Technology, Danvers, MA, USA), rabbit polyclonal anti‐phospho‐IRF3 (Ser369 (D601M); Cell Signaling Technology), rabbit polyclonal anti‐phospho‐STING‐Ser365‐D8F4W (Cell Signaling Technology), rabbit polyclonal anti‐phospho‐STING (Ser365(D1C4T); Cell Signaling Technology), rabbit polyclonal against IFI16/p204 (Elabscience, Houston, TX, USA), rabbit polyclonal anti STING/anti MPYS (Sigma), rabbit monoclonal anti cGAS (Cell Signaling Technology), polyclonal rabbit anti‐biotin antibody (A150; Bethyl Laboratories, Montgomery, TX USA), rabbit IgG‐HRP (Bio‐Rad), goat anti‐rat IgG‐HRP (Bio‐Rad), Cy3® goat anti‐rabbit IgG (Thermo Fisher Scientific), Alexa Fluor® 488 goat anti‐rabbit IgG (Thermo Fisher Scientific), Alexa Fluor® 488 goat anti‐rat IgG (Thermo Fisher Scientific), Alexa Fluor® 488 goat anti‐rabbit (Cell Signaling Technology), and Alexa Fluor® 647 goat anti‐rat IgG (Thermo Fisher Scientific).
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3

Western Blot and Zonulin ELISA Protocol

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Tissues were homogenized in RIPA buffer (Sigma). Equal amounts of protein were loaded into a 4%-12% NUPAGE gel (Fisher). The proteins in the gel were transferred onto PVDF membranes (Invitrogen) using the Invitrogen iBlot system. The top half of the membranes (containing IgG) were blocked overnight at 4°C in 5% Blocking Grade Blocker (Bio-Rad) and 0.1% Tween-20 (Bio-Rad) in PBS (VWR). The membrane was then incubated with goat anti-Rat IgG-HRP (Bio-Rad, 5204-2504, 1:10,000) for 1 hour at room temperature. The lower half of the membrane (containing GAPDH) was blocked for 2 hours at room temperature and incubated overnight at 4°C with the primary antibody, mouse anti-GAPDH (6C5) (Calbiochem, 1:10 000). After washing, the membrane was incubated 30 minutes with the secondary antibody, goat anti-Mouse-HRP (Cell Signaling, 7076P2, 1:10 000). After the last antibody incubation, both membranes were washed and incubated with SuperSignal West Femto Maximum Sensitivity Substrate (Pierce, 34095) and imaged using an iBright FL1000 imager (Invitrogen).
Plasma zonulin, a marker for gut barrier integrity, was measured using a rat zonulin ELISA kit (MyBioSource, MBS753035) according to the manufacturer’s protocol.
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