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Acquity system

Manufactured by Waters Corporation
Sourced in United States, United Kingdom

The Acquity system is a high-performance liquid chromatography (HPLC) instrument designed for analytical and preparative separations. It provides precise and reproducible separation of complex mixtures, enabling efficient detection and quantification of target analytes.

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56 protocols using acquity system

1

Polyphenolics Analysis by UPLC-MS/MS

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Polyphenolics were analyzed using the Waters ACQUITY system (Waters, Milford, MA, USA), consisting of a binary pump manager, sample manager, column manager, PDA detector, and tandem quadrupole mass spectrometer (TQD) with electrospray ionization (ESI). The separation was carried out using a BEH C18 column (100 × 2.1 mm i.d., 1.7 µm, Waters) kept at 50 °C. The following solvent system was applied: mobile phase A (0.1% formic acid in water v/v) and mobile phase B (0.1% formic acid in 40% ACN in water v/v). The gradient program was set as follows: 0 min 5% B, from 0 to 8 min linear to 100% B, and from 8 to 9.5 min for washing and back to initial conditions. The injection volume of the samples was 5 µL (partial loop with needle overfill) and the flow rate was 0.35 mL/min. The following parameters were used for TQD: capillary voltage 3.5 kV; con voltage 30 V in negative mode, the source was kept at 250 °C and the desolvation temperature was 350 °C; con gas flow 100 L/h; and desolvation gas flow 800 L/h. Argon was used as collision gas at a flow rate of 0.3 mL/min. The polyphenolics detection and identification being based on specific PDA spectra, mass-to-charge ratio and fragment ions obtained after collision induced dissociation (CID). All determinations were performed in duplicate. Waters MassLynx software v.4.1 was used for data acquisition and processing.
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2

Metabolomic Analysis Using UHPLC-Q Exactive MS

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Metabolomics was applied using 1,290 ultra-high-performance liquid chromatography (Agilent, CA, USA) coupled with Q Exactive focus MS/MS (Thermo Fisher Scientific, Waltham, MA, USA). Chromatographic separations were performed using a Waters ACQUITY system equipped with an ACQUITY UPLC BEH C18 column (1.7 μm, 2.1 × 100 mm). The mobile phase consisted of 0.1% formic acid water (A) and 0.1% formic acid acetonitrile (B) at the flow rate of 0.5 ml/min, and the injection volume was 4 ml. The gradient program was as follows: 85–25% B (0–11.0 min), 25–2% B (11.0–12.0 min), 2–2% B (12.0–14.0 min), 2–85% B (14.0–14.1 min), 85–85% B (14.1–15.0 min), and 85–85% B (15.0–16.0 min). The ESI source was applied to analyze the chemical composition in both positive and negative ion modes with full scan/ddMS2. The MS parameters were set as follows: the scan range was 50–1,000 m/z, the spray voltages were set at 4.0 and 3.6 kV in positive and negative modes, respectively, sheath gas was 35 arb, auxiliary gas was 10 arb, the capillary temperature was 400°C, the maximum injection time for MS1 and ddMS2 was 100 and 45 ms, respectively, and the resolutions for MS1 and ddMS2 were 70,000 and 17,500, respectively; putative molecules of interest were fragmented using three different collision energies (10, 20, and 40 eV).
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3

Quantification of Ceftiofur by UPLC

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Ceftiofur was quantified by ultra-performance liquid chromatography (UPLC) using an Acquity system (Waters, Milford, MA, USA) equipped with a binary solvent delivery pump, an autosampler, and a tunable UV detector. The chromatographic separation was performed in an Acquity BEH C18 column with 50 mm length x 2.1 mm diameter, with 1.7 μm particle size (Waters, Milford, MA, USA). The mobile phase consisted of a ratio of 78:22 (v/v) of 20 mM of sodium phosphate buffer at pH 6.0, adjusted with 85% orthophosphoric acid, to acetonitrile at a flow rate of 0.6 mL/min. A wavelength of 292 nm was used to obtain the maximum area under the curve (AUC), and the injection volume was 0.5 μL. A calibration curve was prepared using standard solutions of ceftiofur diluted in the mobile phase at 0.25, 50, 100, and 150 μg/mL.
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4

N-Glycan Release and Characterization from gp120

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N-glycans were released from 150 μg recombinant gp120 (JRCSF) by incubation with PNGase F(New England BioLabs) according to manufacturer’s protocol. Glycans were separated from the protein by spin-filtration through 5000 Da MWCO filter (Vivaspin, GE Healthcare) and speedvac dried. Released glycans were 2-AB labelled as described previously (Struwe and Rudd, 2012 (link)). Briefly, glycans were incubated with 20 μL 1 % formic acid for 45 min at room temperature, and dried before addition of 5 μL 2-AB labelling solution (DMSO:glacial acetic acid (7:3 v/v), 1M sodium cyanoborohydride, 0.5 M anthranilamide (2-AB)), followed by incubation for 3 h at 65 °C. Excess dye was removed by purification with PhyNexus normal phase columns, equilibrated with 95% acetonitrile and eluted with 20% acetonitrile. 2-AB labelled glycans were incubated with BanLec for 1 h at 37°C for the depletion assays. Unbound 2-AB labelled glycans were separated from BanLec-glycan complexes using Vivaspin 500, 5000 Da MWCO spin columns (GE Healthcare). Glycans were dried and resuspended in 30 μL 65% CAN prior to analysis using a LudgerSep N2 amide HPLC column (Ludger Ltd). Each HPLC injection consisted of N-glycans released from 10 μg gp120. Analysis was performed using a Waters Acquity system with Empower software.
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5

Quantification of Fruit Anthocyanins

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Anthocyanins were measured in control- and GA3-treated fruits at the full ripeness of both varieties using three replicates per date in the 2017–2018 season. For anthocyanins extraction, 0.1 g of flesh- and peel-enriched tissue was freeze-dried and ground. The tissue was mixed with 80% methanol solution, sonicated, shaken for 20 min, and left overnight in the dark at 4ºC. The samples were centrifuged for 10 min at 4 °C and 4,000 rpm and the supernatant filtered using a 0.22 µm PFTE membrane. Anthocyanins were separated using a Waters Acquity HSS T3 column, 1.8 μm, 100 mm × 2.1 mm, in a UPLC-MS/MS Waters Acquity system (Milford, MA, USA), as reported by Arapitsas et al.59 (link). The anthocyanins were detected in a mass spectrometry Waters Xevo TQMS instrument with an ESI source. For data processing, Mass Lynx Target Lynx Application Manager was used. Cyanidin-3-O-rutinoside was used to estimate anthocyanin since it represented more than 98% of the total anthocyanins in both varieties.
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6

UPLC-MS/MS Analysis of Pazopanib and Metabolites

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Extracted samples were analyzed with a UPLC Waters Acquity system equipped with a Waters TQ-S micro mass spectrometer (triple quadrupole detector) added to an electrospray ionization source (ESI). Components were eluted in a linear gradient with sequential changes in the proportion of aqueous eluent (ammonium formate in ultrapure water, pH = 3.2) and organic eluent (acetonitrile with formic acid 0.1% [v/v]), as previously described [6 (link)]. Data were analyzed with MassLynx software (version 4.2, Waters, Milford, MA, USA). The multiple reaction monitoring (MRM) mode was used for mass spectrometry detection. Selected MRM characteristic transitions were 438.0 > 357.0 (loss of SO2NH2) for pazopanib, 452.0 > 328.0 (loss of SO2NH2, CHO and CH3) and 452.0 > 343.0 (loss of SO2NH2 and CHO) for P-CHO. S-CHO was detected with 413.1 > 340.1 (loss of N(CH2CH3)2), 413.1 > 297.1 (loss of N(CH2CH3)2-(CH2)2-NH-CO), and 413.1 > 268.1 (cleavage of the amide bond and loss of CHO).
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7

Quantifying Liposome DOTAP Concentration via UHPLC

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DOTAP concentration was measured in order to quantify the concentration of liposomes by a U-HPLC protocol adapted from previous studies [24 (link)]. Briefly, a Waters Acquity system (Milford, MA, USA) equipped with a binary solvent delivery pump, sample manager, auto sampler, column-heating compartment, and a photo diode array (PDA) detector was used. Separation was carried out on an XBridge (London, UK) C18, 3.5 µm, 2.1 × 100 mm column maintained at 40 °C. The system was equipped with Empower 2 software for data acquisition and handling. Lipids were eluted using binary linear gradients starting from a mixture of 50% A and 50% B to 100% B in 1.88 min, followed by a 2.08 min plateau at 100% B, where A was 0.15% (v/v) trifluoracetic acid (TFA) in water and B was 0.05% (v/v) TFA in isopropanol. The mobile phase composition was then changed back to the initial solvent mixture. The flow rate of the mobile phase was set at 0.2 mL/min. The samples for injection were diluted directly in isopropanol. The calibration curve was established with DOTAP standards from 1 mg/mL to 0.015 mg/mL at 1:1 dilution steps. UV detection was performed at a wavelength of 205 nm using a PDA detector. Concentration of DOTAP was calculated by measuring the area under the curve (AUC).
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8

UPLC-MS Metabolomics Analysis Protocol

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UPLC-MS was performed as described [30 (link)] with minor modifications. Briefly, 5 μL from each sample were injected onto a C18 Acquity column (Waters Corp. Herts, United Kingdom). Each sample was run in triplicate. Extracts were eluted using a 25-min gradient of 100% A to 100% B (A, water, 0.1% formic acid; B, acetonitrile, 0.1% formic acid) at a flow rate of 500 μL/min and column temperature of 40 °C. Samples were analyzed using an Acquity system (Waters Ltd. Herts, United Kingdom) coupled online to an LCT Premier mass spectrometer (Waters MS Technologies, Ltd.) in negative electrospray mode with a scan range of 50–1000 m/z. Bile acids, long and medium chain fatty acids ionize strongly in negative mode, producing a prominent [M-H] − ion. Capillary voltage was 2.4 Kv, the sample cone was 35 V, the desolvation temperature was 350 °C, the source temperature was 120 °C, and the desolvation gas flow was 900 L/h. Analysis was performed using Waters software Targetlynx for exact quantification against a standard curve and Markerlynx for non-biased principle component analysis UPLC.
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9

PFAA and FTOH Analysis by HPLC-MS/MS and GC/CI-MS

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The instrumental analysis of the PFAAs was carried out by HPLC-MS/MS in Fraunhofer IME while the fluorotelomer alcohols were analysed by GC/CI-MS in Fraunhofer IVV. Detailed information on the analytical methods used is given in Supplemental S1 (PFAA) and S2 (FTOH) of the Electronic Supplementary Material.
PFAA were separated by HPLC using a Waters Acquity system coupled to a Waters Tandem Quadrupole Detector (TQD) mass spectrometer (atmospheric pressure ionisation, negative ion electrospray mode). Generally, the HPLC-MS/MS procedure is considered to be a highly specific technique due to the tandem mass spectrometric detection. Chromatographic conditions, mass spectrometric parameters and mass transitions are provided in Supplemental S1 (PFAA) and S2 (FTOH) of the Electronic Supplementary Material. To be aware of the authenticity of PFBA, we used isotopically labelled PFBA as IS and applied a matrix spiked fortification reference. In case of doubt, PFBA was cross-checked with high-resolution MS/MS (Orbitrap LTQ Discovery XL) for the accurate mass for verification.
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10

Quantification of Retinoids in Testes

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The retinoid contents were determined in testes from 9- to 10-week-old Aldh1a1-3Germ−/− and control littermates. Briefly, ATRA was quantified using liquid chromatography-tandem mass spectrometry (LC-MS/MS) on an AB Sciex 5500 QTRAP in multistage-MRM (multiple reaction monitoring) mode using APCI (atmospheric pressure chemical ionization) in positive ion mode, as previously described (Jones et al., 2015 (link)). Retinol and retinyl esters were quantified by high-performance liquid chromatography with ultraviolet detection (HPLC-UV) on a Waters ACQUITY system using a method that has been previously described (Kane et al., 2008 (link)). Retinoids are expressed in mol/g tissue. Statistical significance was assessed using Student's t-tests.
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