The largest database of trusted experimental protocols

22 protocols using gradient tgx gels

1

Protein Purification and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples collected from each purification step were analysed by SDS-PAGE and Western blot. For SDS-PAGE, precast gradient TGX gels (Bio-Rad) were used. Gels were either stained by Instant Blue (Expedeon) or immediately transferred to PVDF membrane (Bio-Rad) at 100V for 1 h. The proteins on the PVDF membrane were probed with two primary antibodies, rabbit anti-Gs C-18 antibody (cat no. sc-383, Santa Cruz) against Gαs subunit and mouse penta-His antibody (cat no. 34660, QIAGEN) against His-tags. The membrane was washed and incubated with secondary antibodies, 680RD goat anti-mouse and 800CW goat anti-rabbit (LI-COR). Bands were imaged using an infrared imaging system (LI-COR Odyssey Imaging System).
+ Open protocol
+ Expand
2

Protein Purification and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples collected from each purification step were analysed by SDS-PAGE and Western blot. For SDS-PAGE, precast gradient TGX gels (Bio-Rad) were used. Gels were either stained by Instant Blue (Expedeon) or immediately transferred to PVDF membrane (Bio-Rad) at 100V for 1 h. The proteins on the PVDF membrane were probed with two primary antibodies, rabbit anti-Gs C-18 antibody (cat no. sc-383, Santa Cruz) against Gαs subunit and mouse penta-His antibody (cat no. 34660, QIAGEN) against His-tags. The membrane was washed and incubated with secondary antibodies, 680RD goat anti-mouse and 800CW goat anti-rabbit (LI-COR). Bands were imaged using an infrared imaging system (LI-COR Odyssey Imaging System).
+ Open protocol
+ Expand
3

Protein Analysis of Extracellular Vesicles

Check if the same lab product or an alternative is used in the 5 most similar protocols
Llama serum and EV isolates (an EV pellet derived from 100 μl serum, reconstituted in 100 μl DPBS after isolation and purification) were diluted 1:1 in 2x Laemmli sample buffer, boiled for 5 min at 100 °C and separated by SDS-PAGE on 4–20 % gradient TGX gels (BioRad UK). Approximately 5 μg protein was loaded per lane and transferred to nitrocellulose membranes using semi-dry Western blotting. Blocking of membranes was performed in 5 % BSA in TBS-T for 1 h at room temperature (RT) and incubation with primary antibodies, diluted in TBS-T, was carried out at 4 °C overnight (F95 MABN328, Merck, 1/1000; PAD2 ab50257, Abcam, 1/1000; PAD3 ab50246, 1/1000; PAD4 ab50247, 1/1000; citH3 ab5103, 1/1000; CD63 ab216130, 1/1000; Flot-1 ab41927, 1/2000). The membranes were washed in TBS-T for 3 × 10 min at RT and thereafter incubated in the corresponding secondary antibody (anti-rabbit IgG BioRad or anti-mouse IgM BioRad, diluted 1/4000 in TBS-T) for 1 h at RT. Membranes were washed for 6 × 10 min in TBS-T and visualisation performed using electrochemiluminescence (ECL) and the UVP BioDoc-ITTM System (Thermo Fisher Scientific, UK).
+ Open protocol
+ Expand
4

Quantitative Protein Analysis Workflow

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sample collected from SEC was analyzed by SDS–PAGE and western blot. For SDS–PAGE, precast gradient TGX gels (Bio-Rad) were used. Gels were stained by Instant Blue (Expedeon). Antisera included rabbit anti-Gs C-18 antibody (cat no. sc-383, Santa Cruz), goat anti-rabbit antibody (800CW, LI-COR), mouse Penta-His antibody (cat no. 34660, QIAGEN), and goat anti-mouse antibody (680RD, LI-COR).
+ Open protocol
+ Expand
5

Protein Analysis by SDS-PAGE and Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sample collected from size-exclusion chromatography was analysed by SDS–PAGE and Western blot. For SDS–PAGE, precast gradient TGX gels (Bio-Rad) were used. Gels were either stained by Instant Blue (Expedeon) or immediately transferred to PVDF membrane (Bio-Rad) at 100 V for 1 h. The proteins on the PVDF membrane were probed with two primary antibodies, rabbit anti-Gαs C-18 antibody (cat. no. sc-383, Santa Cruz) against Gαs subunit and mouse penta-His antibody (cat. no. 34660, QIAGEN) against His tags. The membrane was washed and incubated with secondary antibodies, 680RD goat anti-mouse and 800CW goat anti-rabbit (LI-COR). Bands were imaged using an infra-red imaging system (LI-COR Odyssey Imaging System).
+ Open protocol
+ Expand
6

Peripherin Protein Crosslinking Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins solutions in PBS-T were diluted to the desired concentration. 1 μL of 1 mM tris(bipyridine)ruthenium (II) chloride followed by 1 μL 20 mM ammonium persulfate (APS) were added for every 18 μL of peripherin solution. The solution was mixed and irradiated with a short-wave UV lamp for 10 s. Samples being analyzed by SDS-PAGE were immediately quenched with 5SDS-PAGE loading buffer containing 500 mM DTT. The samples were heated to 95 °C for 5 min, centrifuged at 500 × g and loaded onto 4–15% gradient TGX gels (Bio-Rad). For crosslinked samples that were used for downstream binding assays, the crosslinking reaction was quenched with 20 μL 100 mM DTT and DTT was removed via spin filtration and then overnight dialysis in a MINI cassette.
+ Open protocol
+ Expand
7

Optimized Western Blot Protocol for Fly Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
For fly samples the amount of sample loaded largely was equivalent to one head per lane but was optimized for each antibody. Generally, 4–15% gradient TGX gels (Bio-Rad) were used and proteins were transferred to PVDF membranes using the iBlot system (Invitrogen). Following primary and secondary antibody incubation, membranes were developed using ECL kit (Biorad Clarity). Alternatively, western blots were scanned using the LI-COR Odyssey system (LI-COR Biosciences). Silver staining was performed with a SilverQuest kit (Invitrogen) following the manufacturer’s instructions. Dual-colour westerns were prepared by assigning independent colour channels to two independent westerns developed in the same membrane.
+ Open protocol
+ Expand
8

Protein Visualization in Serum EVs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total proteins isolated from serum EVs and the F95-enriched protein eluates from halibut serum EVs were assessed by silver staining following SDS-PAGE in 4–20% gradient TGX gels (BioRad) under reducing conditions. The BioRad Silver Stain Plus Kit (1610449, BioRad) was used to visualise the protein bands according to the manufacturer’s instructions (BioRad).
+ Open protocol
+ Expand
9

SDS-PAGE Analysis of Protein Composition

Check if the same lab product or an alternative is used in the 5 most similar protocols
SDS-PAGE (using 4–20% gradient TGX gels, BioRad, UK) was carried out under reducing conditions for the F95-enriched protein eluates from both coelomic fluid and EVs, as well as for whole protein cargo from EVs, and whole protein of the coelomic fluid. The gels were silver stained following SDS-PAGE using the BioRad Silver Stain plus Kit (1610449, BioRad, UK), performed according to the manufacturer’s instructions.
+ Open protocol
+ Expand
10

Proteomic Analysis of E. coli Outer Membrane Vesicles Response to CBD Treatment

Check if the same lab product or an alternative is used in the 5 most similar protocols
To assess differences in E. coli VCS257 MV protein composition in response to CBD treatment, MVs were isolated as before, after 1 h treatment with 1 μM or 5 μM CBD treatment or control untreated, respectively. MVs were assessed by SDS-PAGE (using 4–20 % gradient TGX gels, BioRad, U.K.) and silver staining using the BioRad Silver Stain Plus Kit (1610449, BioRad, U.K.), according to the manufacturer's instructions (BioRad). For assessment of proteomic changes, MVs were subjected to liquid chromatography-mass spectrometry (LC-MS/MS) analysis. MVs from CBD treated, vs. non-treated E. coli were run 1 cm into a SDS-PAGE gel and the whole protein lysate cut out as one band, whereafter it was processed for proteomic analysis (carried out by Cambridge Proteomics, U.K.). Peak list files were submitted to Mascot (in-house, Cambridge Center for Proteomics) using the following database: Uniprot_Escherichia_coli_20180613 (4324 sequences; 1357163 residues).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!