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12 protocols using 70 μm falcon cell strainer

1

Evaluation of Protein Aggregation

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Samples were stained with aggresome and aggregation of unfolded protein was evaluated by fluorescence microscope and flow cytometry according to the manufacturer’s protocol. For fluorescence microscope analysis, samples were incubated with aggresome reagent (1:2000; Enzo Life Science Inc., Farmingdale, NY, USA) for 60 minutes and slides were examined with a fluorescence microscope (DM 2500). For flow cytometry, cells were washed twice with phosphate buffered saline (PBS) and incubated with AccumaxTM (Innovative Cell Technologies, San Diego, CA, USA) for 10 minutes at 37 °C. Cells were recovered in fluorescence activated cell sorting (FACS) buffer composed of DMEM without Phenol Red (Nacalai Tesque) + 2%FBS, passed through a BD Falcon™ 70 μm cell strainer (BD Biosciences, Franklin Lakes, New Jersey, USA), and resuspended in FACS buffer. The cells were then incubated with aggresome reagent (1:2000) for 60 minutes at room, temperature, and washed three times with PBS. The cells were resuspended in FACS buffer and analyzed by flow cytometry using CellQuest Pro software (BD Biosciences).
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2

Brain Cell Dissociation and Isolation

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Single cell suspensions from brains were yielded using Neural Tissue Dissociation Kit (p) from Miltenyi Biotec (Auburn, CA, USA) following the manufacturer’s protocol. Briefly, pups were euthanized by decapitation at P7 and blood was collected. Brains were immediately placed on ice cold Hank’s Balanced Salt Solution (HBSS) (without Ca+ and Mg+) and weighed. For each sample, 200–400 mg of brain tissue was utilized and samples were not pooled. After removing cerebellum and frontal lobes via sterile blade, right and left hemispheres from individual brains were placed in a pre-heated (37 °C) proprietary enzyme mix (Miltenyi, Neural Tissue Dissociation Kit) and serial mechanical dissociation, enzymatic digestion steps were completed on Miltenyi Gentle MACS Dissociator and MACS Mix Tube Rotator, respectively. Subsequently, cells were filtered through a BD Falcon 70-μm cell strainer, washed with HBSS, and resuspended in PBS. Next, isolated brain cells in PBS were carefully layered onto
Ficoll Paque Plus (GE Healthcare, Chicago, IL, USA), brain mononuclear cells were separated by density gradient centrifugation and collected for further flow cytometry applications.
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3

Quantification of Cerebellar Bacterial Load

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Half cerebellum from each mouse was homogenised in 1 ml of Brain Heart Infusion (BHI; Oxoid) with 10% glycerol by using a Falcon® 70 μm cell strainer (BD Biosciences, Milano, Italy). Samples were serially diluted in BHI and plated onto chocolate CG agar plates to determine CFU counts/cerebellum. Assay detection limit was 20 CFU/cerebellum.
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4

Cord Blood Mononuclear Cell Isolation

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Cord blood (CB) units were purchased from King Abdullah International Medical Research Center’s (KAIMRC) Cord Blood Bank. CB buffy coat-enriched cells were thawed in MEM-ɑ medium containing 10% ACD-A (anticoagulant citrate dextrose solution) and 5% human serum albumin (Sigma), centrifugated at 300g, resuspended in 10 mL PBS containing 0.1 mg/mL DNAse, incubated at room temperature for 10 minutes, centrifuged, washed twice with MEM medium containing 10% ACD-A, resuspended in 30 mL of MEM-ɑ culture medium with 5% FBS and incubated at 37°C for 12 to 24 hours in a hypoxic chamber (Stem cells Technologies) containing water in a petri dish. The following day, the cells were rinsed with PBS/ACD-A, exposed to a density gradient using Ficol-paque (GE Healthcare) in LeucoSep™ centrifuge tubes (Thomas Scientific) for 12 minutes at room temperature with brake-off, then the mononuclear layer was transferred to a separate tube, washed twice with PBS/ACD, filtered using a BD Falcon 70 μm cell strainer to obtain single cells, which were enumerated, stained, sorted, and subjected to flow cytometric analysis.
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5

Spleen Single-Cell Isolation and Flow Cytometry

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For spleen single cell suspensions the tissue was gently dissociated with a syringe plunger through Falcon® 70 μm Cell Strainer (BD Biosciences, San Jose CA). After lysing the erythrocytes with PharmLyse (BD Biosciences, San Jose CA), approximately 1 × 106 cells were blocked with FcBlock (clone 2.4G2) for 15 min on ice. Then cells were stained with antibodies (1:1000 dilution) to murine CD4 (L3T4, clone RM4-4, FITC conjugated), CD8 (Ly-2, clone 53–6.7, PE or FITC conjugated), CD3e (IgG1, clone 145-2C11, PerCP-Cy5.5 conjugated), and CD45 (IgG2b, clone 30-F11, APC conjugated) for 30 minutes on ice covered from direct light. After staining cells were fixed with 2% paraformaldehyde (Electron Microscopy Services, Hatfield PA), and analyzed using a FACSCalibur (BD Biosciences Immunocytometry Systems, San Diego CA). The SIINFEKL Pentamer and a control unloaded pentamer labeled with APC were purchased from Proimmune (Proimmune, Sarasota, FL). A MHC class I H2-Kb tetramer loaded with YopE69–77 (KbYopE69–77) was obtained from the NIH tetramer core. Pentamers and tetramers were used at a dilution of 1:500 and staining was done as described for antibody staining for flow cytometry.
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6

Isolation of Tissue-Derived Endothelial Cells

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For endothelial cell isolation the resected specimens containing normal or malignant tissue were dissociated using a standardised, semi-automated protocol based on a combination of mechanical tissue disruption and collagenase IV digestion, using a gentleMACS dissociator (Miltenyi Biotec, Bergisch Gladbach, Germany). Briefly, tissues were cut in small pieces (2–4 mm) in a petri dish prior to collection in a dedicated gentleMACS tube, to which 10 ml of RPMI 1640 (Lonza, BioWhittaker, Walkersville, MD, USA) with 1% L-Glutamin, 1% Penicillin/Streptomycin, 10% heat-inactivated FBS (Sigma Aldrich, St Louis, MO, USA), as well as collagenase IV (Sigma Aldrich), 1 mg ml−1, and DNAse I (Sigma Aldrich), 10 μg ml−1, had been added. The tissues were mechanically minced on the gentleMACS after incubation for 30 min at 37 °C in a shaking water-bath. This procedure was repeated once. After the second dissociation step at the gentleMACS, the cell suspension was passed through a 70 μm Falcon cell strainer (BD Biosciences, San Jose, CA, USA). The cell suspension was then collected in a 50 ml conical tube, and centrifuged at 1000 g for 5 min. The resulting pellet was washed with 50 ml phosphate buffered saline (PBS) and concentrated at 2 × 106 cells ml−1 in PBS for flow cytometry to detect and characterise the tissue-derived ECs.
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7

Tumor Dissociation and Single-Cell Isolation

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On day 21 post tumor inoculation, tumor-bearing mice were sacrificed, tumors were isolated, weighed, minced into small pieces and re-suspended in a 37°C pre-warmed digestion medium composed of 1 mg/mL Collagenase A (Roche) in WiIliam's E medium (Gibco). The gentleMACS™ Dissociator (Miltenyi Biotec) was used to homogenize tumors, according to the manufacturer's protocol. Homogenized tumors were then incubated for 30 min at 37°C on a shaker (120 rpm). The homogenization and incubation procedures were repeated once more and then cells were filtered through a 70 μm Falcon cell strainer (BD Bioscience). Sterile lysis buffer [(150 mM NH4Cl, 10 mM KHCO3, 0.1 mM Na2-EDTA pH = 7.2–7.4), in a volume of 5 mL per sample] was used to lyse erythrocytes for 5 min at room temperature. 15 mL Iscove's modified Dulbecco's medium (IMDM) per sample was used to stop the lysis reaction. Cell suspensions were then centrifuged, and the supernatant was discarded and cells resuspended in IMDM with 5% FCS.
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8

Extracting Skin Cells for Analysis

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A 2 × 2 cm2 piece of depilated back skin was minced and then digested in 6 ml of RPMI 1640 medium containing 10% FBS and 2 mg/ml crude collagenase (Sigma-Aldrich, St. Louis, MO, USA), 1.5 mg/ml hyaluronidase (Sigma-Aldrich, St. Louis, MO, USA), and 0.03 mg/ml DNase I (Roche Applied Science, Indianapolis, IN, USA) at 37 °C for 120 min [33 (link)]. Samples were passed through a 70-μm Falcon cell strainer (BD Biosciences, San Jose, CA, USA) to obtain single-cell suspensions. After centrifugation at 1200 rpm for 5 min, the cell pellet was resuspended in a RPMI 1640 medium. The cells were passed through a 40-μm Falcon cell strainer. The harvested cells were washed with ice-cold PBS and used for flow cytometric analysis and real-time PCR analysis.
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9

ELISPOT Analysis of Antigen-Specific Immune Cells

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Inguinal draining lymph nodes of mCC1- (n = 8) or mIgG1- (n = 7) treated MP4-immunized mice were collected on day 27.6 ± 5.4 after disease onset, disintegrated mechanically and filtered through a 70 μm Falcon cell strainer (BD Biosciences). Cells were washed twice with RPMI-1640 (Biochrom AG) and resuspended in HL-1 (Lonza) containing 1% L-glutamine (Sigma) and 1% penicillin/streptomycin (Sigma). MultiScreen®HTS 96-well ELISPOT plates (Merck Millipore) were coated in duplicate wells with either 10 μg/ml MP4 or 15 μg/ml anti-mouse IgG (MabTech). PBS alone (Biochrom) served as negative control coating. Plates were blocked with 10% fetal bovine serum (FBS; Gibco) in sterile PBS at room temperature for 2 h. Cells were plated at 1 × 106 cells/well and incubated at 37 °C and 7% CO2 for 24 h. Biotin-conjugated goat anti-mouse IgG (Dako) was used as secondary antibody at 1:2,000 dilution in 0.5% FBS/PBS. After incubation with Streptavidin-AP (Vector Laboratories) at 1:800 dilution in 0.5% FBS/PBS for 2 h, plates were developed with Vector Blue substrate (Vector Laboratories). The spots were counted on an ImmunoSpot Series 6 UV Analyzer (CTL-Europe).
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10

Murine B Cell Enrichment and Activation

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For murine B cell enrichment the spleens of n = 3 wild-type B6 mice per individual experiment were disintegrated mechanically and filtered through a 70 μm Falcon cell strainer (BD Biosciences). Cells were washed twice with RPMI-1640 (Biochrom). To enrich B cells a mouse B lymphocyte enrichment set (BD IMagTM) for negative selection was used. The enriched B cells were plated at a concentration of 5 × 105 cells per well into 96-well cell culture plates. Cells were preincubated with mCC1 antibody at 200 μg/ml for 90 min prior to a three-day incubation period with 25 μg/ml LPS + 5 U/ml IL-4. mIgG1 was used as an isotype control antibody for mCC1. The remaining amount of single cells was counted using the ITCN plugin for ImageJ 1.48 k (NIH) software analyzing at least 10 individual images per culture condition and experiment, which were acquired on a Leica DMIL LED (Leica Microsystems) microscope.
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