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11 protocols using erythromycin

1

Antimicrobial Resistance Profiling

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All isolates were examined for resistance to routine antimicrobial agents by standard disk diffusion method using Staphylococcus aureus (ATCC 25923) and Escherichia coli (ATCC 25922) as control strains (17 ). The antibiotics tested were gentamicin, amikacin, ceftazidime, ceftizoxime, cefotaxime, ceftriaxone, imipenem, ciprofloxacin, co-trimoxazole, chloramphenicol, penicillin, oxacillin, ampicillin, vancomycin, rifampicin and erythromycin (Mast Co, the UK). Isolates showing intermediate levels of susceptibility were classified as nonsusceptible.
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2

Antimicrobial Susceptibility of Enterococci

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The antimicrobial susceptibilities of 175 E. faecalis and 67 E. faecium strains were examined by using the disk agar diffusion (DAD) method in accordance with the Clinical and Laboratory Standards Institute (CLSI) guidelines.17 18 Erythromycin (15 µg), Tetracycline (30 µg), Ciprofloxacin (5 µg), Vancomycin (30 µg), Teicoplanin (30 µg), Norfloxacin (10 µg), Nitrofurantoin (300 µg), Quinopristin-Dalfopristin [Synercid (15 µg)] (Mast Co., UK), Chloramphenicol (30 µg), Gentamicin (10 µg), Linezolid (30 µg), and Ampicillin (10 µg) (HiMedia Mumbai Co., India) were used for antimicrobial susceptibility testing (AST).
In addition, minimum inhibitory concentrations (MIC) of the glycopeptide antibiotics i.e. Vancomycin and Teicoplanin (Sigma-Aldrich, Poole, Co., UK) against the E. faecalis and E. faecium isolates were determined using the microdilution broth method.17 18
E. faecalis ATCC 29212 (Vancomycin sensitive), E. faecalis ATCC 51299 (vanB positive), E. faecalis E206 (vanA positive) were used as quality control.
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3

Antibiotic Susceptibility Profiling of Isolates

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The samples were tested for their susceptibility against a panel of 11 antibiotics by using a standard disc diffusion method46 (link). The antibiotics tested were the following: oxacillin (1 µg), gentamicin (10 µg), mupirocin (20 µg), amoxicillin (10 µg), erythromycin (15 µg), tetracycline (10 µg), cefoxitin (30 µg), cefepime (30 µg), fusidic acid (10 µg), penicillin (1 unit) and chloramphenicol (30 µg) (Mast Group, Merseyside, UK). Antibiotic profiles of each isolate ware determined according the recommendation of the Clinical & Laboratory Standards Institute (CLSI) and British Society for Antimicrobial Chemotherapy (BSAC)46 (link),47 .
In addition, the minimum inhibitory concentrations (MIC) for oxacillin and cefoxitin were determined using E-tests (Biomerieux, Basingstoke, UK)46 (link),47 .
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4

Methicillin-Resistant Staphylococcus aureus Profiling

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The methicillin resistance of 40 S. aureus isolates were tested by using the Oxacillin agar screen method on the Muller Hinton agar modified by adding NaCl (4 %) + Oxacillin (6 µg/ml) (Dhanalakshmi et al. 2012 ). The strains that could grow on this medium were then tested to be revealed whether they carry the mecA gene (Kot et al. 2020 (link); Ubukata et al. 1989 (link)), as described in the next section.
The disc diffusion method was conducted to determine the antibiotic resistance pattern of the identified methicillin-resistant S. aureus strains to Vancomycin (30 µg), Ciprofloxacin (5 µg), Erythromycin (15 µg), Tetracycline (30 µg), Gentamycin (10 µg), Ceftriaxone (30 µg), Amikacin (30 µg), Mupirocin (5 µg), Oxacillin (30 µg), Chloramphenicol (30 µg) and Trimethoprim/Sulfamethoxazole (1.25/23.75 µg) purchased from MAST Group, Merseyside, UK.
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5

Comprehensive Antibiotic Susceptibility Testing

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The Kirby–Bauer disc-diffusion method on Mueller–Hinton agar was used to test the susceptibility of the isolates against amikacin, gentamicin, tobramycin, kanamycin, tetracycline, erythromycin, clindamycin, linezolid, teicoplanin, ciprofloxacin, rifampicin, quinupristin-dalfopristin and trimethoprim-sulfamethoxazole (Mast Co., Bootle, UK) based on the CLSI guideline. Susceptibility to vancomycin, mupirocin, tigecycline and fusidic acid was assessed by the broth microdilution method to determine the MIC titre. The European Committee for Antimicrobial Susceptibility Testing (EUCAST) breakpoints was used to determine MIC titres of fusidic acid and tigecycline (EUCAST 2018). The results of other antibiotics were interpreted by using the CLSI 2018 breakpoints. Low-level and high-level mupirocin resistance (LLMUPR, HLMUPR), inducible macrolide-lincosamide-streptogramin group B (iMLSB) and constitutive (cMLSB) macrolide-lincosamide-streptogramin group B were identified based on the CLSI guideline. Susceptibility testing was quality controlled using S. aureus ATCC 25923, ATCC 43300 and ATCC 29213 strains. Powders of antibiotics were all obtained from Sigma Chemical Co. (St Louis, MO, USA).
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6

Antimicrobial Susceptibility Profiling of E. coli

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The antimicrobial susceptibility test was done with the disk diffusion method (Bauer et al, 1966) using Mueller–Hinton agar (Difco). Initially, an emulsion of sample in saline solution was prepared by adjustment to the 0.5 McFarland turbidity standards. The susceptibility of the E. coli strains was tested in relation to several antibiotics, including: chloramphenicol (CAF) (30 μg), ciprofloxacin (5 μg), gentamycin (10 μg), trimethoprim (1.25 μg-sulfamethoxazole 23.75 μg), erythromycin (15 μg), streptomycin (10 μg) and tetracycline (30 μg) (Mast Group Ltd., Merseyside, UK). Using sterile tweezers, commercially available antibiotic disks were placed individually on the surface of Mueller-Hinton agar. After 24 h of incubation at 35°C, the strains were scored as “susceptible”, “intermediate”, or “resistant” to each antibiotic based on the measurement of the inhibition zone, as recommended by clinical laboratory standard institute (CLSI).26
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7

Antibiotic Susceptibility Profiling of Isolates

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The disk diffusion test was employed to determine the susceptibility of the isolates to vancomycin (30 µg), teicoplanin (30 µg), gentamicin (120 µg), linezolid (30 µg), ciprofloxacin (5 µg), erythromycin (15 µg), ampicillin (10 µg), tetracycline (30 µg) and rifampicin (5 µg) (Mast Group Ltd., Merseyside, UK). The microdilution broth method was used to determine the minimal inhibitory concentration (MIC) of vancomycin for the isolates that showed resistance phenotype after the disk diffusion method. The results were interpreted according to the guidelines of the Clinical and Laboratory Standards Institute (CLSI) [10 ]. Isolates that showed intermediate levels of susceptibility were classified as non-susceptible. Multidrug-resistance (MDR) was defined as resistance to three or more different classes of antibiotics [11 (link)].
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8

Antibiotic Resistance Profiling of Bacterial Isolates

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To assess the antibiotic resistance of the isolates, the disc diffusion method (DDM) and Micro dilution methods were applied62 (link). The sensitivities of the bacteria to antibiotics were interpreted as sensitive (S), intermediate (I), and resistant (R) based on the Clinical & Laboratory Standards Institute (CLSI) guidelines63 . The Antibiotic discs used were chloramphenicol (30 µg/disc), gentamicin (10 µg/disc), erythromycin (15 µg/disc), clindamycin (2 µg/disc), kanamycin (30 µg/disc), vancomycin (30 µg/disc), penicillin (10 IU/disc), streptomycin (10 µg/disc), tetracycline (30 µg/disc) and ampicillin (10 µg/disc) that were purchased from MAST Group (Merseyside, UK). To evaluate the minimum inhibitory concentrations (MICs) of these ten antibiotics, different amounts of each antibiotic were diluted in broth medium to prepare the following concentrations: 0.5 to 256 μg/mL (chloramphenicol), 0.125 to 64 μg/mL (clindamycin, erythromycin, and ampicillin) and 0.25 to 128 μg/mL (vancomycin, tetracycline). The strains treated with these antibiotics were incubated at 35 °C for 24 h. The minimum bactericidal concentrations (MBCs) were determined as described by CLSI63 .
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9

Antibiotic Susceptibility of Enterococcus spp.

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Antibiotic susceptibility testing of 175 E. faecalis strains and 67 E. faecium strains was performed using Kirby-Bauer disk diffusion method on Muller-Hinton agar in according to the Clinical and Laboratory Standards Institute (CLSI) guidelines (14 ). Antimicrobial agents used in this study were included: vancomycin (30 μg), teicoplanin (30 μg), tetracycline (30 μg), erythromycin (15 μg), norfloxacin (10 μg), ciprofloxacin (5 μg), nitrofurantoin (300 μg), quinopristin-dalfopristin [synercid (15 μg)] (Mast co., UK), chloramphenicol (30 μg), linezolid (30 μg), gentamicin (10 μg), and ampicillin (10 μg) (HiMedia Mumbai Co., India).
Determination of minimum inhibitory concentration (MIC) of the glycopeptide antibiotics i.e. vancomycin and teicoplanin (Sigma-Aldrich, Poole, Co., UK) for E. faecalis and E. faecium isolates was done using microdilution broth method and Cation Adjustment Muller Hinton Broth (CAMHB) medium according to the CLSI guidelines (14 ). The E. faecalis ATCC 29212 (vancomycin sensitive), E. faecalis ATCC 51299 (vanB positive), E. faecalis E206 (vanA positive) were used as quality control strains for performing antimicrobial tests.
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10

Antimicrobial Susceptibility Testing of E. coli

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Antimicrobial-susceptibility testing was performed by the Kirby Bauer disc diffusion test and breakpoints were determined in accordance with Clinical and Laboratory Standards Institute guidelines [24 ] using whonet version 2020 [25 (link)]. The following antimicrobials (with their disc concentration in μg) were tested: tetracycline (30 μg) (TCY), cefotaxime (30 μg) (CTX), trimethoprim/sulfamethoxazole (1.25/23.75 μg) (SXT), chloramphenicol (30 μg) (CHL), erythromycin (15 μg) (ERY), nalidixic acid (5 μg) (NAL) and ciprofloxacin (5 μg) (CIP) (Mast Group). Escherichia coli ATCC 25922 was used as reference strain for quality-control purposes. Antibiotic-susceptibility data were stored and analysed with whonet [25 (link)].
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