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6 protocols using anti mouse igg hrp linked antibody

1

Western Blot Analysis of Protein Expression

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Cells in 35 mm dishes were rinsed with PBS and lysed by addition of sodium
dodecylsulfate (SDS) sample buffer [2.5 mM Tris-HCl (pH 6.8), 2.5% SDS, 100 mM
dithiothreitol, 10% glycerol, 0.025% bromophenol blue]. Proteins were separated
in Bio-Rad precast polyacrylamide gels and transferred onto membranes using the
Bio-Rad Transblot Turbo Semi-Dry Transfer System. PVDF membranes were blocked
with 5% milk in 1 × TBST for 1 h and incubated with the primary antibody
overnight at 4°C, followed by mouse or rabbit HRP-conjugated secondary antibody
(CST, Danvers, MA, USA). Signals were detected with SuperSignal™ West Pico or
Dura Substrate (Thermo Fisher, Waltham, MA, USA) using the Bio-Rad ChemiDoc™
Touch Imaging System. The antibodies used were as follows: anti-NDUFA4L2
(Proteintech, 66050-1), anti-NDUFB8 (20E9DH10C12) (Abcam, AB110242), anti-HER 2
(Cell signaling, Cat# 2242), anti-rabbit IgG, HRP-linked antibody (Sigma,
7074S), and anti-mouse IgG HRP-linked antibody (Sigma, 7076S).
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2

Comprehensive Molecular Profiling Protocol

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Lenalidomide, pomalidomide, palbociclib, melphalan, bortezomib and dexamethasone were obtained from SelleckChem. BSJ-03-123, YKL-06-102 and CST528 were synthesized according to Brand et al. 2019 and Steinebach et al. 2020.
Primary antibodies used for Western blotting from Cell Signaling (Danvers, USA) include CDK6 (clone DCS83, #3136, RRID:AB_2229289, 1:2000), CDK4 (clone D9G3E, #12790, RRID:AB_2631166, 1:1000), Rb (clone 4H1, #9309, RRID:AB_823629, 1:1000), Phospho-Rb (Ser807/811) (#9308, RRID:AB_331472, 1:1000), IKZF3 (clone D1C1E, #15103, RRID:AB_2744524, 1:1000), IKZF1 (clone D6N9Y, #14859, RRID:AB_2744523, 1:1000), IRF4 (clone D43H10, #4299, RRID:AB_10547141, 1:1000), c-Myc (clone D84C12, #5605, RRID:AB_1903938, 1:1000), RRM1 (clone D12F12, #8637, RRID:AB_11217623, 1:1000), RRM2 (clone E7Y9J, #65939, 1:1000), anti-rabbit IgG HRP-linked antibody (#7074, 1:5000), anti-mouse IgG HRP-linked antibody (#7076, 1:5000); antibodies from Sigma-Aldrich (St. Louis, USA) include anti-α-Tubulin (#T5168, RRID:AB_477579, 1:7000); antibodies from Santa Cruz Biotechnology (Dallas, USA) include CDK6 (clone B-10, sc-7961, 1:1000), TRIP13 (clone A-7, sc-514285, 1:1000); antibodies from Abcam (Cambridge, UK) include anti-β-actin (ab20272, 1:10,000).
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3

Investigating Cellular Signaling Pathways

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Anti-YB-1 (A303-231A, Bethyl (Montgomery, TX, USA), Rabbit Polyclonal) used at 1:10,000; anti-pYB-1 (Phospho-YB1 (Ser102) (C34A2) Rabbit mAb #2900, Cell Signaling (Danvers, MA, USA)) used at 1:2000; anti-pAkt (Phospho-Akt (Ser473) (D9E) Rabbit mAb #4060, Cell Signaling) used at 1:2000; anti-total Akt (Akt (pan) (C67E7) Rabbit mAb #4691, Cell Signaling) used at 1:2000; anti-H3 (Histone H3 (D1H2) Rabbit mAb #4499, Cell Signaling) used at 1:2000; anti-pS6 (Phospho-S6 Ribosomal Protein (Ser235/236) (D57.2.2E) Rabbit mAb #4858, Cell Signaling) used at 1:2000; anti-S6 (S6 Ribosomal Protein (5G10) Rabbit mAb #2217, Cell Signaling) used at 1:2000; anti-p GSK-3β(Phospho-GSK-3β (Ser9) (D85E12) Rabbit mAb #5558, Cell Signaling) used at 1:2000; anti-γH2AX (Anti-phospho-Histone H2A.X (Ser139) Antibody, clone JBW301, Millipore (Temecula, CA, USA); anti-rabbit: (Anti-rabbit IgG, HRP-linked antibody #7074, Cell Signaling,) used at 1:4000; anti-mouse (Anti-Mouse IgG, HRP-linked antibody, A9044, Sigma-Aldrich) used at 1:10,000 for Western blotting.
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4

Western blot analysis of autophagy-related proteins

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Primary antibodies targeting the following proteins were used: TSPAN9 (1:1000, Abcam), LC3 (1:1000, CST), P62 (1:1000, CST), Beclin1 (1:1000, Bioworld), PI3K (1:1000, CST), p-PI3K (1:1000, CST), AKT (1:1000, CST), p-AKT (1:1000, CST), mTOR (1:1000, CST), and p-mTOR (1:1000, CST). Cells were collected and lysed in ice-cold RIPA lysis buffer (1× Tris-buffered saline, 1% Nonidet P-40, 0.5% sodium deoxycholate, and 0.1% sodium dodecyl sulfate (SDS). Then, 40 µg of cell lysate from each sample was separated by SDS-polyacrylamide gel electrophoresis (PAGE) through a 10% gel. Electrophoretic transfer of the proteins from the gels to nitrocellulose membranes was carried out in a transblotting chamber. After the membranes were blocked with 5% nonfat milk (w/v) in phosphate-buffered saline (PBS) for 1 h to inhibit nonspecific binding, they were incubated with primary antibodies at room temperature for 2 h. The membranes were then washed 3 times with PBST before secondary antibodies diluted in PBST were incubated with the membranes for 40 min at room temperature. The following secondary antibodies were used: anti-rabbit IgG HRP-linked antibody and anti-mouse IgG HRP-linked antibody (Sigma, 1:6000). The membranes were washed 6 times with PBST for 1 h, and the protein bands were visualized by chemiluminescence (Clarity Western ECL; Bio-Rad).
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5

Protein Profiling of Rat Ovaries

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Total protein isolated from rat ovaries was used for Western blotting. Extracts containing equivalent quantities of proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE, 7.5-12% gels) and transferred onto polyvinylidene fluoride (PVDF) membranes (Millipore, USA). The antibodies used included β-actin (Sigma-Aldrich, USA); PI3K, Akt, mTOR, PCNA, cleaved-caspase3, Bax, Bcl2, and phospho-CaMKII (Abcam, Britain); phospho-Akt, GDF9, BMP15, and BMPR2 (Abclonal, China); Smad3 (Beyotime, China); caspase3 (Bioss, China) and CaMKII (Cell Signaling Technology, USA). The protein band corresponding to protein specifically bound by the primary antibody was detected by an anti-rabbit or an anti-mouse IgG-HRP-linked antibody (Sigma-Aldrich, USA). Antibody-reactive bands were visualized using chemiluminescence (Sigma-Aldrich, USA).
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6

Immunohistochemical Analysis of Ovarian Tissue

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Ovarian tissues were fixed in 4% paraformaldehyde (PFA), embedded in paraffin, and sliced into 5-µm sections. Every fifth slide was stained with hematoxylin and eosin (H&E) for differential follicle counts. The corpus luteum, cysts, antral follicles and atretic follicles were defined according to a previous study 62 .
Sample sections were processed for immunohistochemistry to assess GC proliferation. The sections were incubated with PCNA antibody (Abcam, Britain) overnight at 4 °C. The next day, the sections were incubated with an anti-mouse IgG-HRP-linked antibody (Sigma-Aldrich, USA) for 60 minutes at room temperature. Subsequently, the sections were visualized with a diaminobenzidine tetrahydrochloride (DAB) substrate chromogen system (Boster, China) at room temperature for 3 minutes. Negative controls were incubated with phosphate-buffered saline (PBS) instead of the PCNA antibody and showed no staining. The proliferation index of PCNA-positive cells was determined by the average number of positively stained GCs divided by the average total number of GCs in the area multiplied by 100.
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